Mercurial > repos > galaxyp > openms_spectrafilternormalizer
comparison SpectraFilterNormalizer.xml @ 0:1557ac8060b8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:29:50 -0500 |
| parents | |
| children | 46d8cd731cf8 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1557ac8060b8 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [Identification]--> | |
| 4 <tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="2.1.0"> | |
| 5 <description>Normalizes intensity of peak spectra.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">SpectraFilterNormalizer</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>SpectraFilterNormalizer | |
| 14 | |
| 15 #if $param_in: | |
| 16 -in $param_in | |
| 17 #end if | |
| 18 #if $param_out: | |
| 19 -out $param_out | |
| 20 #end if | |
| 21 #if $param_algorithm_method: | |
| 22 -algorithm:method $param_algorithm_method | |
| 23 #end if | |
| 24 #if $adv_opts.adv_opts_selector=='advanced': | |
| 25 #if $adv_opts.param_force: | |
| 26 -force | |
| 27 #end if | |
| 28 #end if | |
| 29 </command> | |
| 30 <inputs> | |
| 31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> | |
| 32 <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum"> | |
| 33 <option value="to_one" selected="true">to_one</option> | |
| 34 <option value="to_TIC">to_TIC</option> | |
| 35 </param> | |
| 36 <expand macro="advanced_options"> | |
| 37 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 38 </expand> | |
| 39 </inputs> | |
| 40 <outputs> | |
| 41 <data name="param_out" format="mzml"/> | |
| 42 </outputs> | |
| 43 <help>Normalizes intensity of peak spectra. | |
| 44 | |
| 45 | |
| 46 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html</help> | |
| 47 </tool> |