Mercurial > repos > galaxyp > openms_spectrafilternormalizer
comparison SpectraFilterNormalizer.xml @ 0:1557ac8060b8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
---|---|
date | Wed, 01 Mar 2017 12:29:50 -0500 |
parents | |
children | 46d8cd731cf8 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:1557ac8060b8 |
---|---|
1 <?xml version='1.0' encoding='UTF-8'?> | |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
3 <!--Proposed Tool Section: [Identification]--> | |
4 <tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="2.1.0"> | |
5 <description>Normalizes intensity of peak spectra.</description> | |
6 <macros> | |
7 <token name="@EXECUTABLE@">SpectraFilterNormalizer</token> | |
8 <import>macros.xml</import> | |
9 </macros> | |
10 <expand macro="references"/> | |
11 <expand macro="stdio"/> | |
12 <expand macro="requirements"/> | |
13 <command>SpectraFilterNormalizer | |
14 | |
15 #if $param_in: | |
16 -in $param_in | |
17 #end if | |
18 #if $param_out: | |
19 -out $param_out | |
20 #end if | |
21 #if $param_algorithm_method: | |
22 -algorithm:method $param_algorithm_method | |
23 #end if | |
24 #if $adv_opts.adv_opts_selector=='advanced': | |
25 #if $adv_opts.param_force: | |
26 -force | |
27 #end if | |
28 #end if | |
29 </command> | |
30 <inputs> | |
31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> | |
32 <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum"> | |
33 <option value="to_one" selected="true">to_one</option> | |
34 <option value="to_TIC">to_TIC</option> | |
35 </param> | |
36 <expand macro="advanced_options"> | |
37 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
38 </expand> | |
39 </inputs> | |
40 <outputs> | |
41 <data name="param_out" format="mzml"/> | |
42 </outputs> | |
43 <help>Normalizes intensity of peak spectra. | |
44 | |
45 | |
46 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html</help> | |
47 </tool> |