Mercurial > repos > galaxyp > openms_spectrafilternormalizer

comparison SpectraFilterNormalizer.xml @ 7:d82bd07d8190 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:31:31 -0400
parents 7a973f4ac2d2
children 8904d228594a
comparison
equal deleted inserted replaced
6:5a2591e63b0e 7:d82bd07d8190
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraFilterNormalizer 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterNormalizer
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
29 #if $adv_opts.adv_opts_selector=='advanced': 29 #if $adv_opts.adv_opts_selector=='advanced':
30 #if $adv_opts.param_force: 30 #if $adv_opts.param_force:
31 -force 31 -force
32 #end if 32 #end if
33 #end if 33 #end if
34 </command> 34 ]]></command>
35 <inputs> 35 <inputs>
36 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 36 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
37 <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum"> 37 <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum">
38 <option value="to_one" selected="true">to_one</option> 38 <option value="to_one" selected="true">to_one</option>
39 <option value="to_TIC">to_TIC</option> 39 <option value="to_TIC">to_TIC</option>
46 <data name="param_out" format="mzml"/> 46 <data name="param_out" format="mzml"/>
47 </outputs> 47 </outputs>
48 <help>Normalizes intensity of peak spectra. 48 <help>Normalizes intensity of peak spectra.
49 49
50 50
51 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html</help> 51 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterNormalizer.html</help>
52 </tool> 52 </tool>