Mercurial > repos > galaxyp > openms_spectrafilternormalizer
view SpectraFilterNormalizer.xml @ 8:77fd678d74f2 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author | galaxyp |
---|---|
date | Fri, 17 May 2019 10:04:45 -0400 |
parents | d82bd07d8190 |
children | 8904d228594a |
line wrap: on
line source
<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Identification]--> <tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="2.3.0"> <description>Normalizes intensity of peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterNormalizer</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[SpectraFilterNormalizer #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_algorithm_method: -algorithm:method #if " " in str($param_algorithm_method): "$param_algorithm_method" #else $param_algorithm_method #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if ]]></command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum"> <option value="to_one" selected="true">to_one</option> <option value="to_TIC">to_TIC</option> </param> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>Normalizes intensity of peak spectra. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterNormalizer.html</help> </tool>