Mercurial > repos > galaxyp > openms_spectrafilterparentpeakmower

comparison SpectraFilterParentPeakMower.xml @ 7:d484676f03cd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:01:52 -0400
parents b16ae1f4e2ed
children e60558a87656
comparison
equal deleted inserted replaced
6:411bad9b573a 7:d484676f03cd
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraFilterParentPeakMower 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterParentPeakMower
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
45 #end if 45 #end if
46 #if $adv_opts.param_algorithm_set_to_zero: 46 #if $adv_opts.param_algorithm_set_to_zero:
47 -algorithm:set_to_zero $adv_opts.param_algorithm_set_to_zero 47 -algorithm:set_to_zero $adv_opts.param_algorithm_set_to_zero
48 #end if 48 #end if
49 #end if 49 #end if
50 </command> 50 ]]></command>
51 <inputs> 51 <inputs>
52 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 52 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
53 <param name="param_algorithm_window_size" type="float" value="2.0" label="The size of the m/z window where the peaks are removed, +/- window_size" help="(-window_size) "/> 53 <param name="param_algorithm_window_size" type="float" value="2.0" label="The size of the m/z window where the peaks are removed, +/- window_size" help="(-window_size) "/>
54 <param name="param_algorithm_default_charge" type="integer" value="2" label="If the precursor has no charge set, the default charge is assumed" help="(-default_charge) "/> 54 <param name="param_algorithm_default_charge" type="integer" value="2" label="If the precursor has no charge set, the default charge is assumed" help="(-default_charge) "/>
55 <param name="param_algorithm_consider_NH3_loss" type="integer" value="1" label="Whether NH3 loss peaks from the precursor should be removed" help="(-consider_NH3_loss) "/> 55 <param name="param_algorithm_consider_NH3_loss" type="integer" value="1" label="Whether NH3 loss peaks from the precursor should be removed" help="(-consider_NH3_loss) "/>
66 <data name="param_out" format="mzml"/> 66 <data name="param_out" format="mzml"/>
67 </outputs> 67 </outputs>
68 <help>Applies thresholdfilter to peak spectra. 68 <help>Applies thresholdfilter to peak spectra.
69 69
70 70
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterParentPeakMower.html</help> 71 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterParentPeakMower.html</help>
72 </tool> 72 </tool>