Mercurial > repos > galaxyp > openms_spectrafilterscaler
diff SpectraFilterScaler.xml @ 13:8de40ceef18b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author | galaxyp |
---|---|
date | Thu, 01 Dec 2022 18:57:46 +0000 |
parents | e27862d4e69f |
children | f714192eab03 |
line wrap: on
line diff
--- a/SpectraFilterScaler.xml Fri Nov 06 20:10:07 2020 +0000 +++ b/SpectraFilterScaler.xml Thu Dec 01 18:57:46 2022 +0000 @@ -1,13 +1,11 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Identification]--> -<tool id="SpectraFilterScaler" name="SpectraFilterScaler" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="20.05"> +<tool id="SpectraFilterScaler" name="SpectraFilterScaler" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> <description>Applies thresholdfilter to peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterScaler</token> <import>macros.xml</import> - <import>macros_autotest.xml</import> - <import>macros_test.xml</import> </macros> <expand macro="requirements"/> <expand macro="stdio"/> @@ -41,11 +39,11 @@ <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> </configfiles> <inputs> - <param name="in" argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/> + <param argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/> <expand macro="adv_opts_macro"> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> - <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> - <expand macro="list_string_san"/> + <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> + <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> + <expand macro="list_string_san" name="test"/> </param> </expand> <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> @@ -58,13 +56,15 @@ <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> </data> </outputs> - <tests> - <expand macro="autotest_SpectraFilterScaler"/> - <expand macro="manutest_SpectraFilterScaler"/> - </tests> + <tests><test expect_num_outputs="1"> <!-- copy pasted from autotest_SpectraFilterWindowMower (1st test) and autogenrated output --> + <param name="adv_opts|test" value="true"/> + <param name="in" value="SpectraFilterSqrtMower_1_input.mzML"/> + <output name="out" value="SpectraFilterScaler.mzML" compare="sim_size"/> + </test> +</tests> <help><![CDATA[Applies thresholdfilter to peak spectra. -For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_SpectraFilterScaler.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_SpectraFilterScaler.html]]></help> <expand macro="references"/> </tool>