Mercurial > repos > galaxyp > openms_spectrafilterwindowmower

comparison SpectraFilterWindowMower.xml @ 7:068c7611f400 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:00:08 -0400
parents 746db2c7b499
children 45207485f1f1
comparison
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6:91f4f9f6a140 7:068c7611f400
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraFilterWindowMower 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterWindowMower
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
35 #if $adv_opts.adv_opts_selector=='advanced': 35 #if $adv_opts.adv_opts_selector=='advanced':
36 #if $adv_opts.param_force: 36 #if $adv_opts.param_force:
37 -force 37 -force
38 #end if 38 #end if
39 #end if 39 #end if
40 </command> 40 ]]></command>
41 <inputs> 41 <inputs>
42 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 42 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
43 <param name="param_algorithm_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis" help="(-windowsize) "/> 43 <param name="param_algorithm_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis" help="(-windowsize) "/>
44 <param name="param_algorithm_peakcount" type="integer" value="2" label="The number of peaks that should be kept" help="(-peakcount) "/> 44 <param name="param_algorithm_peakcount" type="integer" value="2" label="The number of peaks that should be kept" help="(-peakcount) "/>
45 <param name="param_algorithm_movetype" display="radio" type="select" optional="False" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used" help="(-movetype) "> 45 <param name="param_algorithm_movetype" display="radio" type="select" optional="False" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used" help="(-movetype) ">
54 <data name="param_out" format="mzml"/> 54 <data name="param_out" format="mzml"/>
55 </outputs> 55 </outputs>
56 <help>Applies thresholdfilter to peak spectra. 56 <help>Applies thresholdfilter to peak spectra.
57 57
58 58
59 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html</help> 59 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterWindowMower.html</help>
60 </tool> 60 </tool>