Mercurial > repos > galaxyp > openms_spectramerger
comparison SpectraMerger.xml @ 7:106130886208 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 05:05:56 -0400 |
parents | 5b8e882b9fdc |
children | bf529c279902 |
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6:f8717535fbe3 | 7:106130886208 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>SpectraMerger | 13 <command detect_errors="aggressive"><![CDATA[SpectraMerger |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
110 #end if | 110 #end if |
111 #if $adv_opts.param_algorithm_average_gaussian_cutoff: | 111 #if $adv_opts.param_algorithm_average_gaussian_cutoff: |
112 -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff | 112 -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff |
113 #end if | 113 #end if |
114 #end if | 114 #end if |
115 </command> | 115 ]]></command> |
116 <inputs> | 116 <inputs> |
117 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/> | 117 <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/> |
118 <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) "> | 118 <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) "> |
119 <option value="average_gaussian" selected="true">average_gaussian</option> | 119 <option value="average_gaussian" selected="true">average_gaussian</option> |
120 <option value="average_tophat">average_tophat</option> | 120 <option value="average_tophat">average_tophat</option> |
171 <data name="param_out" format="mzml"/> | 171 <data name="param_out" format="mzml"/> |
172 </outputs> | 172 </outputs> |
173 <help>Merges spectra (each MS level separately), increasing S/N ratios. | 173 <help>Merges spectra (each MS level separately), increasing S/N ratios. |
174 | 174 |
175 | 175 |
176 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraMerger.html</help> | 176 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraMerger.html</help> |
177 </tool> | 177 </tool> |