Mercurial > repos > galaxyp > openms_spectramerger

comparison SpectraMerger.xml @ 11:e08b7d2880f4 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:05:03 +0000
parents bf529c279902
children 4333c513b7a1
comparison
equal deleted inserted replaced
10:7b8a7d2dab8f 11:e08b7d2880f4
101 <param name="mz_tolerance" argument="-algorithm:precursor_method:mz_tolerance" type="float" optional="true" min="0.0" value="0.0001" label="Max m/z distance of the precursor entries of two spectra to be merged in [Da]" help=""/> 101 <param name="mz_tolerance" argument="-algorithm:precursor_method:mz_tolerance" type="float" optional="true" min="0.0" value="0.0001" label="Max m/z distance of the precursor entries of two spectra to be merged in [Da]" help=""/>
102 <param name="rt_tolerance" argument="-algorithm:precursor_method:rt_tolerance" type="float" optional="true" min="0.0" value="5.0" label="Max RT distance of the precursor entries of two spectra to be merged in [s]" help=""/> 102 <param name="rt_tolerance" argument="-algorithm:precursor_method:rt_tolerance" type="float" optional="true" min="0.0" value="5.0" label="Max RT distance of the precursor entries of two spectra to be merged in [s]" help=""/>
103 </section> 103 </section>
104 </section> 104 </section>
105 <expand macro="adv_opts_macro"> 105 <expand macro="adv_opts_macro">
106 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 106 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
107 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 107 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
108 <expand macro="list_string_san"/> 108 <expand macro="list_string_san"/>
109 </param> 109 </param>
110 </expand> 110 </expand>
111 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 111 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
112 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 112 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
113 </param> 113 </param>
114 </inputs> 114 </inputs>
115 <outputs> 115 <outputs>
116 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 116 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
123 <expand macro="manutest_SpectraMerger"/> 123 <expand macro="manutest_SpectraMerger"/>
124 </tests> 124 </tests>
125 <help><![CDATA[Merges spectra (each MS level separately), increasing S/N ratios. 125 <help><![CDATA[Merges spectra (each MS level separately), increasing S/N ratios.
126 126
127 127
128 For more information, visit http://www.openms.de/documentation/TOPP_SpectraMerger.html]]></help> 128 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_SpectraMerger.html]]></help>
129 <expand macro="references"/> 129 <expand macro="references"/>
130 </tool> 130 </tool>