Mercurial > repos > galaxyp > openms_spectrastsearchadapter

comparison readme.md @ 5:6af2aab4321f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author galaxyp
date Tue, 20 Mar 2018 15:13:07 -0400
parents c54dbaf4802b
children 28e96ae21a44
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4:c54dbaf4802b 5:6af2aab4321f
168 <output name="param_out" file="DecoyDatabase_output.fasta"/> 168 <output name="param_out" file="DecoyDatabase_output.fasta"/>
169 </test> 169 </test>
170 </tests> 170 </tests>
171 ``` 171 ```
172 172
173
174 * `This section might not be up to date. It might be worth trying if these tools will run now.` These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in
175 by the automatic conversion step and are therefore in `tools_blacklist.txt`:
176 * SeedListGenerator
177 * SpecLibSearcher
178 * MapAlignerIdentification
179 * MapAlignerPoseClustering
180 * MapAlignerSpectrum
181 * MapAlignerRTTransformer
182
183 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well: 173 * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well:
184 * OMSSAAdapter 174 * OMSSAAdapter
185 * MyrimatchAdapter 175 * MyrimatchAdapter
186 176
187 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: 177 * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: