Mercurial > repos > galaxyp > openms_spectrastsearchadapter

comparison SpectraSTSearchAdapter.xml @ 6:ab22e4296eaf draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:50:38 -0400
parents c54dbaf4802b
children 28e96ae21a44
comparison
equal deleted inserted replaced
5:6af2aab4321f 6:ab22e4296eaf
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SpectraSTSearchAdapter 13 <command detect_errors="aggressive"><![CDATA[SpectraSTSearchAdapter
14 14
15 -spectra_files 15 -spectra_files
16 #for token in $param_spectra_files: 16 #for token in $param_spectra_files:
17 $token 17 $token
18 #end for 18 #end for
62 #end if 62 #end if
63 #if $adv_opts.param_force: 63 #if $adv_opts.param_force:
64 -force 64 -force
65 #end if 65 #end if
66 #end if 66 #end if
67 </command> 67 ]]></command>
68 <inputs> 68 <inputs>
69 <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) "> 69 <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) ">
70 <sanitizer> 70 <sanitizer>
71 <valid initial="string.printable"> 71 <valid initial="string.printable">
72 <remove value="'"/> 72 <remove value="'"/>
94 <data name="param_output_files" format="txt"/> 94 <data name="param_output_files" format="txt"/>
95 </outputs> 95 </outputs>
96 <help>Interface to the SEARCH Mode of the SpectraST executable 96 <help>Interface to the SEARCH Mode of the SpectraST executable
97 97
98 98
99 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpectraSTSearchAdapter.html</help> 99 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SpectraSTSearchAdapter.html</help>
100 </tool> 100 </tool>