Mercurial > repos > galaxyp > openms_staticmodification

comparison StaticModification.xml @ 3:ace4851c8c37 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
author galaxyp
date Fri, 14 Jun 2024 21:46:23 +0000
parents 9989f6be8bea
children
comparison
equal deleted inserted replaced
2:9989f6be8bea 3:ace4851c8c37
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 1 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 2 <!--Proposed Tool Section: [Identification Processing]-->
4 <tool id="StaticModification" name="StaticModification" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 3 <tool id="StaticModification" name="StaticModification" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
5 <description>Applies a set of modifications to all PeptideIDs in an idXML file.</description> 4 <description>Applies a set of modifications to all PeptideIDs in an idXML file</description>
6 <macros> 5 <macros>
7 <token name="@EXECUTABLE@">StaticModification</token> 6 <token name="@EXECUTABLE@">StaticModification</token>
8 <import>macros.xml</import> 7 <import>macros.xml</import>
9 </macros> 8 </macros>
10 <expand macro="requirements"/> 9 <expand macro="requirements"/>
13 @EXT_FOO@ 12 @EXT_FOO@
14 #import re 13 #import re
15 14
16 ## Preprocessing 15 ## Preprocessing
17 mkdir in && 16 mkdir in &&
18 ln -s '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' && 17 cp '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' &&
19 mkdir out && 18 mkdir out &&
20 19
21 ## Main program call 20 ## Main program call
22 21
23 set -o pipefail && 22 set -o pipefail &&
37 <configfiles> 36 <configfiles>
38 <inputs name="args_json" data_style="paths"/> 37 <inputs name="args_json" data_style="paths"/>
39 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 38 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
40 </configfiles> 39 </configfiles>
41 <inputs> 40 <inputs>
42 <param argument="-in" type="data" format="idxml" optional="false" label="Input: identification results" help=" select idxml data sets(s)"/> 41 <param argument="-in" type="data" format="idxml" label="Input: identification results" help=" select idxml data sets(s)"/>
43 <param argument="-mods" multiple="true" type="select" optional="true" label="List of manual modifications, specified using Unimod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> 42 <param argument="-mods" type="select" multiple="true" optional="true" label="List of manual modifications, specified using Unimod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'">
44 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 43 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
45 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option> 44 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option>
46 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option> 45 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option>
47 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 46 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
48 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 47 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
49 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 48 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
50 <option value="2-succinyl (C)">2-succinyl (C)</option> 49 <option value="2-succinyl (C)">2-succinyl (C)</option>
51 <option value="2HPG (R)">2HPG (R)</option> 50 <option value="2HPG (R)">2HPG (R)</option>
52 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> 51 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option>
52 <option value="3-hydroxybenzyl-phosphate (K)">3-hydroxybenzyl-phosphate (K)</option>
53 <option value="3-hydroxybenzyl-phosphate (S)">3-hydroxybenzyl-phosphate (S)</option>
54 <option value="3-hydroxybenzyl-phosphate (T)">3-hydroxybenzyl-phosphate (T)</option>
55 <option value="3-hydroxybenzyl-phosphate (Y)">3-hydroxybenzyl-phosphate (Y)</option>
53 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> 56 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option>
54 <option value="3sulfo (N-term)">3sulfo (N-term)</option> 57 <option value="3sulfo (N-term)">3sulfo (N-term)</option>
55 <option value="4-ONE (C)">4-ONE (C)</option> 58 <option value="4-ONE (C)">4-ONE (C)</option>
56 <option value="4-ONE (H)">4-ONE (H)</option> 59 <option value="4-ONE (H)">4-ONE (H)</option>
57 <option value="4-ONE (K)">4-ONE (K)</option> 60 <option value="4-ONE (K)">4-ONE (K)</option>
137 <option value="Ammonium (D)">Ammonium (D)</option> 140 <option value="Ammonium (D)">Ammonium (D)</option>
138 <option value="Ammonium (E)">Ammonium (E)</option> 141 <option value="Ammonium (E)">Ammonium (E)</option>
139 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> 142 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option>
140 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> 143 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option>
141 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> 144 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option>
145 <option value="Andro-H2O (C)">Andro-H2O (C)</option>
142 <option value="Archaeol (C)">Archaeol (C)</option> 146 <option value="Archaeol (C)">Archaeol (C)</option>
143 <option value="Arg (N-term)">Arg (N-term)</option> 147 <option value="Arg (N-term)">Arg (N-term)</option>
144 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option> 148 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option>
145 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option> 149 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option>
146 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option> 150 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option>
240 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option> 244 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option>
241 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> 245 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option>
242 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> 246 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option>
243 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> 247 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option>
244 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> 248 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option>
249 <option value="Biotin:Aha-DADPS (M)">Biotin:Aha-DADPS (M)</option>
245 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> 250 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option>
246 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> 251 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option>
247 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> 252 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option>
248 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> 253 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option>
249 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> 254 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option>
272 <option value="BITC (C)">BITC (C)</option> 277 <option value="BITC (C)">BITC (C)</option>
273 <option value="BITC (K)">BITC (K)</option> 278 <option value="BITC (K)">BITC (K)</option>
274 <option value="BITC (N-term)">BITC (N-term)</option> 279 <option value="BITC (N-term)">BITC (N-term)</option>
275 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> 280 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option>
276 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> 281 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option>
277 <option value="Bodipy (C)">Bodipy (C)</option>
278 <option value="Brij35 (N-term)">Brij35 (N-term)</option> 282 <option value="Brij35 (N-term)">Brij35 (N-term)</option>
279 <option value="Brij58 (N-term)">Brij58 (N-term)</option> 283 <option value="Brij58 (N-term)">Brij58 (N-term)</option>
280 <option value="Bromo (F)">Bromo (F)</option> 284 <option value="Bromo (F)">Bromo (F)</option>
281 <option value="Bromo (H)">Bromo (H)</option> 285 <option value="Bromo (H)">Bromo (H)</option>
282 <option value="Bromo (W)">Bromo (W)</option> 286 <option value="Bromo (W)">Bromo (W)</option>
704 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option> 708 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option>
705 <option value="Dehydrated (S)">Dehydrated (S)</option> 709 <option value="Dehydrated (S)">Dehydrated (S)</option>
706 <option value="Dehydrated (T)">Dehydrated (T)</option> 710 <option value="Dehydrated (T)">Dehydrated (T)</option>
707 <option value="Dehydrated (Y)">Dehydrated (Y)</option> 711 <option value="Dehydrated (Y)">Dehydrated (Y)</option>
708 <option value="Dehydro (C)">Dehydro (C)</option> 712 <option value="Dehydro (C)">Dehydro (C)</option>
713 <option value="Delta:H(-1)N(-1)18O(1) (N)">Delta:H(-1)N(-1)18O(1) (N)</option>
709 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option> 714 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option>
710 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option> 715 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option>
711 <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option>
712 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option> 716 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option>
713 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> 717 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option>
714 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> 718 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option>
715 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> 719 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option>
716 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option> 720 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option>
717 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> 721 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option>
718 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> 722 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option>
719 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> 723 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option>
720 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> 724 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option>
721 <option value="Delta:H(3)C(3)O(2) (K)">Delta:H(3)C(3)O(2) (K)</option>
722 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> 725 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option>
723 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> 726 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option>
724 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> 727 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option>
725 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> 728 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option>
726 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> 729 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option>
728 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option> 731 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option>
729 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> 732 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option>
730 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> 733 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option>
731 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> 734 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option>
732 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option> 735 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option>
736 <option value="Delta:H(4)C(3)O(2) (K)">Delta:H(4)C(3)O(2) (K)</option>
733 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option> 737 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option>
734 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> 738 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option>
735 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> 739 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option>
736 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> 740 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option>
737 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> 741 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option>
1300 <option value="Ethanolamine (D)">Ethanolamine (D)</option> 1304 <option value="Ethanolamine (D)">Ethanolamine (D)</option>
1301 <option value="Ethanolamine (E)">Ethanolamine (E)</option> 1305 <option value="Ethanolamine (E)">Ethanolamine (E)</option>
1302 <option value="Ethanolyl (C)">Ethanolyl (C)</option> 1306 <option value="Ethanolyl (C)">Ethanolyl (C)</option>
1303 <option value="Ethanolyl (K)">Ethanolyl (K)</option> 1307 <option value="Ethanolyl (K)">Ethanolyl (K)</option>
1304 <option value="Ethanolyl (R)">Ethanolyl (R)</option> 1308 <option value="Ethanolyl (R)">Ethanolyl (R)</option>
1305 <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option>
1306 <option value="Ethyl (C-term)">Ethyl (C-term)</option> 1309 <option value="Ethyl (C-term)">Ethyl (C-term)</option>
1307 <option value="Ethyl (D)">Ethyl (D)</option> 1310 <option value="Ethyl (D)">Ethyl (D)</option>
1308 <option value="Ethyl (E)">Ethyl (E)</option> 1311 <option value="Ethyl (E)">Ethyl (E)</option>
1309 <option value="Ethyl (K)">Ethyl (K)</option> 1312 <option value="Ethyl (K)">Ethyl (K)</option>
1310 <option value="Ethyl (N-term)">Ethyl (N-term)</option> 1313 <option value="Ethyl (N-term)">Ethyl (N-term)</option>
1394 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option> 1397 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option>
1395 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option> 1398 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option>
1396 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option> 1399 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option>
1397 <option value="Glu (E)">Glu (E)</option> 1400 <option value="Glu (E)">Glu (E)</option>
1398 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option> 1401 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option>
1402 <option value="Glu+O(2) (H)">Glu+O(2) (H)</option>
1399 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option> 1403 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option>
1400 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option> 1404 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option>
1401 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option> 1405 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option>
1402 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option> 1406 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option>
1403 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option> 1407 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option>
1408 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option> 1412 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option>
1409 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option> 1413 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option>
1410 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option> 1414 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option>
1411 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option> 1415 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option>
1412 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option> 1416 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option>
1413 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)</option>
1414 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> 1417 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option>
1415 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option> 1418 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option>
1416 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option> 1419 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option>
1417 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option> 1420 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option>
1418 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option> 1421 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option>
1432 <option value="Gluratylation (K)">Gluratylation (K)</option> 1435 <option value="Gluratylation (K)">Gluratylation (K)</option>
1433 <option value="Glutathione (C)">Glutathione (C)</option> 1436 <option value="Glutathione (C)">Glutathione (C)</option>
1434 <option value="Gly (K)">Gly (K)</option> 1437 <option value="Gly (K)">Gly (K)</option>
1435 <option value="Gly (S)">Gly (S)</option> 1438 <option value="Gly (S)">Gly (S)</option>
1436 <option value="Gly (T)">Gly (T)</option> 1439 <option value="Gly (T)">Gly (T)</option>
1440 <option value="Gly+O(2) (H)">Gly+O(2) (H)</option>
1437 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option> 1441 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option>
1438 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option> 1442 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option>
1439 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option> 1443 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option>
1440 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option> 1444 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option>
1441 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option> 1445 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option>
1822 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> 1826 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option>
1823 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> 1827 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option>
1824 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> 1828 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option>
1825 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> 1829 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option>
1826 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> 1830 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option>
1831 <option value="Hex(6)HexNAc(5)NeuAc(3) (N)">Hex(6)HexNAc(5)NeuAc(3) (N)</option>
1827 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> 1832 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option>
1828 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> 1833 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option>
1829 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> 1834 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option>
1830 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> 1835 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option>
1831 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> 1836 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option>
1833 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> 1838 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option>
1834 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> 1839 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option>
1835 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> 1840 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option>
1836 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> 1841 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option>
1837 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> 1842 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option>
1843 <option value="Hex(7)HexNAc(6) (N)">Hex(7)HexNAc(6) (N)</option>
1844 <option value="Hex(7)HexNAc(6) (S)">Hex(7)HexNAc(6) (S)</option>
1845 <option value="Hex(7)HexNAc(6) (T)">Hex(7)HexNAc(6) (T)</option>
1838 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> 1846 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option>
1839 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> 1847 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option>
1840 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> 1848 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option>
1841 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> 1849 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option>
1842 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> 1850 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option>
1888 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> 1896 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option>
1889 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> 1897 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option>
1890 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> 1898 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option>
1891 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> 1899 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option>
1892 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> 1900 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option>
1901 <option value="His+O(2) (H)">His+O(2) (H)</option>
1893 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option> 1902 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option>
1894 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option> 1903 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option>
1895 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option> 1904 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option>
1896 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option> 1905 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option>
1897 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option> 1906 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option>
2025 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> 2034 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option>
2026 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option> 2035 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option>
2027 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> 2036 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option>
2028 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> 2037 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option>
2029 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> 2038 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option>
2039 <option value="Kdo (S)">Kdo (S)</option>
2040 <option value="Kdo (T)">Kdo (T)</option>
2030 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> 2041 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option>
2031 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> 2042 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option>
2032 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> 2043 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option>
2033 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> 2044 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option>
2034 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> 2045 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option>
2046 <option value="Label:13C(3)15N(1) (S)">Label:13C(3)15N(1) (S)</option>
2035 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> 2047 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option>
2036 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> 2048 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option>
2037 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> 2049 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option>
2038 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> 2050 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option>
2039 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> 2051 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option>
2114 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option> 2126 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option>
2115 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> 2127 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option>
2116 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> 2128 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option>
2117 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option> 2129 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option>
2118 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> 2130 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option>
2131 <option value="LG-pyrrole (C)">LG-pyrrole (C)</option>
2119 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> 2132 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option>
2120 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> 2133 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option>
2121 <option value="Lipoyl (K)">Lipoyl (K)</option> 2134 <option value="Lipoyl (K)">Lipoyl (K)</option>
2122 <option value="LRGG (K)">LRGG (K)</option> 2135 <option value="LRGG (K)">LRGG (K)</option>
2123 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> 2136 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option>
2124 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> 2137 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option>
2138 <option value="LTX+Lophotoxin (Y)">LTX+Lophotoxin (Y)</option>
2125 <option value="Lys (N-term)">Lys (N-term)</option> 2139 <option value="Lys (N-term)">Lys (N-term)</option>
2140 <option value="Lys+O(2) (H)">Lys+O(2) (H)</option>
2126 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option> 2141 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option>
2127 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option> 2142 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option>
2128 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option> 2143 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option>
2129 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option> 2144 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option>
2130 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option> 2145 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option>
2155 <option value="maleimide5 (C)">maleimide5 (C)</option> 2170 <option value="maleimide5 (C)">maleimide5 (C)</option>
2156 <option value="maleimide5 (K)">maleimide5 (K)</option> 2171 <option value="maleimide5 (K)">maleimide5 (K)</option>
2157 <option value="Malonyl (C)">Malonyl (C)</option> 2172 <option value="Malonyl (C)">Malonyl (C)</option>
2158 <option value="Malonyl (K)">Malonyl (K)</option> 2173 <option value="Malonyl (K)">Malonyl (K)</option>
2159 <option value="Malonyl (S)">Malonyl (S)</option> 2174 <option value="Malonyl (S)">Malonyl (S)</option>
2175 <option value="MBS+peptide (C)">MBS+peptide (C)</option>
2160 <option value="MDCC (C)">MDCC (C)</option> 2176 <option value="MDCC (C)">MDCC (C)</option>
2161 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option> 2177 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option>
2162 <option value="Menadione (C)">Menadione (C)</option> 2178 <option value="Menadione (C)">Menadione (C)</option>
2163 <option value="Menadione (K)">Menadione (K)</option> 2179 <option value="Menadione (K)">Menadione (K)</option>
2164 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> 2180 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option>
2166 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> 2182 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option>
2167 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> 2183 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option>
2168 <option value="MesitylOxide (H)">MesitylOxide (H)</option> 2184 <option value="MesitylOxide (H)">MesitylOxide (H)</option>
2169 <option value="MesitylOxide (K)">MesitylOxide (K)</option> 2185 <option value="MesitylOxide (K)">MesitylOxide (K)</option>
2170 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option> 2186 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option>
2187 <option value="Met+O(2) (H)">Met+O(2) (H)</option>
2171 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option> 2188 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option>
2172 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option> 2189 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option>
2173 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option> 2190 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option>
2174 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option> 2191 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option>
2175 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option> 2192 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option>
2349 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> 2366 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option>
2350 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> 2367 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option>
2351 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> 2368 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option>
2352 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> 2369 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option>
2353 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> 2370 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option>
2354 <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option>
2355 <option value="NP40 (N-term)">NP40 (N-term)</option> 2371 <option value="NP40 (N-term)">NP40 (N-term)</option>
2356 <option value="NQIGG (K)">NQIGG (K)</option> 2372 <option value="NQIGG (K)">NQIGG (K)</option>
2357 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> 2373 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option>
2358 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> 2374 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option>
2359 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> 2375 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option>
2437 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option> 2453 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option>
2438 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option> 2454 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option>
2439 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option> 2455 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option>
2440 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option> 2456 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option>
2441 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option> 2457 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option>
2458 <option value="phenyl-phosphate (K)">phenyl-phosphate (K)</option>
2459 <option value="phenyl-phosphate (S)">phenyl-phosphate (S)</option>
2460 <option value="phenyl-phosphate (T)">phenyl-phosphate (T)</option>
2461 <option value="phenyl-phosphate (Y)">phenyl-phosphate (Y)</option>
2442 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> 2462 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option>
2443 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> 2463 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option>
2444 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> 2464 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option>
2445 <option value="Phospho (C)">Phospho (C)</option> 2465 <option value="Phospho (C)">Phospho (C)</option>
2446 <option value="Phospho (D)">Phospho (D)</option> 2466 <option value="Phospho (D)">Phospho (D)</option>
2451 <option value="Phospho (S)">Phospho (S)</option> 2471 <option value="Phospho (S)">Phospho (S)</option>
2452 <option value="Phospho (T)">Phospho (T)</option> 2472 <option value="Phospho (T)">Phospho (T)</option>
2453 <option value="Phospho (Y)">Phospho (Y)</option> 2473 <option value="Phospho (Y)">Phospho (Y)</option>
2454 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> 2474 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option>
2455 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> 2475 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option>
2476 <option value="Phosphoadenosine (S)">Phosphoadenosine (S)</option>
2456 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> 2477 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option>
2457 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> 2478 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option>
2458 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option> 2479 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option>
2459 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option> 2480 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option>
2460 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option> 2481 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option>
2482 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> 2503 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option>
2483 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> 2504 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option>
2484 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> 2505 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option>
2485 <option value="Piperidine (K)">Piperidine (K)</option> 2506 <option value="Piperidine (K)">Piperidine (K)</option>
2486 <option value="Piperidine (N-term)">Piperidine (N-term)</option> 2507 <option value="Piperidine (N-term)">Piperidine (N-term)</option>
2508 <option value="Pro+O(2) (H)">Pro+O(2) (H)</option>
2487 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option> 2509 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option>
2488 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option> 2510 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option>
2489 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option> 2511 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option>
2490 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option> 2512 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option>
2491 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option> 2513 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option>
2559 <option value="QEQTGG (K)">QEQTGG (K)</option> 2581 <option value="QEQTGG (K)">QEQTGG (K)</option>
2560 <option value="QQQTGG (K)">QQQTGG (K)</option> 2582 <option value="QQQTGG (K)">QQQTGG (K)</option>
2561 <option value="QTGG (K)">QTGG (K)</option> 2583 <option value="QTGG (K)">QTGG (K)</option>
2562 <option value="Quinone (W)">Quinone (W)</option> 2584 <option value="Quinone (W)">Quinone (W)</option>
2563 <option value="Quinone (Y)">Quinone (Y)</option> 2585 <option value="Quinone (Y)">Quinone (Y)</option>
2586 <option value="RBS-ID_Uridine (A)">RBS-ID_Uridine (A)</option>
2587 <option value="RBS-ID_Uridine (C)">RBS-ID_Uridine (C)</option>
2588 <option value="RBS-ID_Uridine (D)">RBS-ID_Uridine (D)</option>
2589 <option value="RBS-ID_Uridine (E)">RBS-ID_Uridine (E)</option>
2590 <option value="RBS-ID_Uridine (F)">RBS-ID_Uridine (F)</option>
2591 <option value="RBS-ID_Uridine (G)">RBS-ID_Uridine (G)</option>
2592 <option value="RBS-ID_Uridine (H)">RBS-ID_Uridine (H)</option>
2593 <option value="RBS-ID_Uridine (I)">RBS-ID_Uridine (I)</option>
2594 <option value="RBS-ID_Uridine (K)">RBS-ID_Uridine (K)</option>
2595 <option value="RBS-ID_Uridine (L)">RBS-ID_Uridine (L)</option>
2596 <option value="RBS-ID_Uridine (M)">RBS-ID_Uridine (M)</option>
2597 <option value="RBS-ID_Uridine (N)">RBS-ID_Uridine (N)</option>
2598 <option value="RBS-ID_Uridine (P)">RBS-ID_Uridine (P)</option>
2599 <option value="RBS-ID_Uridine (Q)">RBS-ID_Uridine (Q)</option>
2600 <option value="RBS-ID_Uridine (R)">RBS-ID_Uridine (R)</option>
2601 <option value="RBS-ID_Uridine (S)">RBS-ID_Uridine (S)</option>
2602 <option value="RBS-ID_Uridine (T)">RBS-ID_Uridine (T)</option>
2603 <option value="RBS-ID_Uridine (V)">RBS-ID_Uridine (V)</option>
2604 <option value="RBS-ID_Uridine (W)">RBS-ID_Uridine (W)</option>
2605 <option value="RBS-ID_Uridine (Y)">RBS-ID_Uridine (Y)</option>
2564 <option value="Retinylidene (K)">Retinylidene (K)</option> 2606 <option value="Retinylidene (K)">Retinylidene (K)</option>
2565 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> 2607 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option>
2566 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> 2608 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option>
2567 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> 2609 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option>
2568 <option value="RNPXlink2 (F)">RNPXlink2 (F)</option>
2569 <option value="RNPXlink2 (K)">RNPXlink2 (K)</option>
2570 <option value="RNPXlink2 (L)">RNPXlink2 (L)</option>
2571 <option value="RNPXlink3 (C)">RNPXlink3 (C)</option>
2572 <option value="RNPXlink3 (F)">RNPXlink3 (F)</option>
2573 <option value="RNPXlink4 (C)">RNPXlink4 (C)</option>
2574 <option value="RNPXlink5 (F)">RNPXlink5 (F)</option>
2575 <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option>
2576 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> 2610 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option>
2577 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> 2611 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option>
2578 <option value="Saligenin (H)">Saligenin (H)</option> 2612 <option value="Saligenin (H)">Saligenin (H)</option>
2579 <option value="Saligenin (K)">Saligenin (K)</option> 2613 <option value="Saligenin (K)">Saligenin (K)</option>
2580 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option> 2614 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option>
2598 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option> 2632 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option>
2599 <option value="serotonylation (Q)">serotonylation (Q)</option> 2633 <option value="serotonylation (Q)">serotonylation (Q)</option>
2600 <option value="shTMT (K)">shTMT (K)</option> 2634 <option value="shTMT (K)">shTMT (K)</option>
2601 <option value="shTMT (N-term)">shTMT (N-term)</option> 2635 <option value="shTMT (N-term)">shTMT (N-term)</option>
2602 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option> 2636 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option>
2637 <option value="shTMTpro (K)">shTMTpro (K)</option>
2638 <option value="shTMTpro (N-term)">shTMTpro (N-term)</option>
2639 <option value="shTMTpro (Protein N-term)">shTMTpro (Protein N-term)</option>
2603 <option value="SMA (K)">SMA (K)</option> 2640 <option value="SMA (K)">SMA (K)</option>
2604 <option value="SMA (N-term)">SMA (N-term)</option> 2641 <option value="SMA (N-term)">SMA (N-term)</option>
2605 <option value="spermidine (Q)">spermidine (Q)</option> 2642 <option value="spermidine (Q)">spermidine (Q)</option>
2606 <option value="spermine (Q)">spermine (Q)</option> 2643 <option value="spermine (Q)">spermine (Q)</option>
2607 <option value="SPITC (K)">SPITC (K)</option> 2644 <option value="SPITC (K)">SPITC (K)</option>
2773 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option> 2810 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option>
2774 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option> 2811 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option>
2775 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option> 2812 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option>
2776 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option> 2813 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option>
2777 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option> 2814 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option>
2778 <option value="Ub-amide (C)">Ub-amide (C)</option>
2779 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> 2815 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option>
2780 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> 2816 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option>
2781 <option value="Ub-VME (C)">Ub-VME (C)</option> 2817 <option value="Ub-VME (C)">Ub-VME (C)</option>
2782 <option value="UgiJoullie (D)">UgiJoullie (D)</option> 2818 <option value="UgiJoullie (D)">UgiJoullie (D)</option>
2783 <option value="UgiJoullie (E)">UgiJoullie (E)</option> 2819 <option value="UgiJoullie (E)">UgiJoullie (E)</option>
2968 <option value="ZGB (K)">ZGB (K)</option> 3004 <option value="ZGB (K)">ZGB (K)</option>
2969 <option value="ZGB (N-term)">ZGB (N-term)</option> 3005 <option value="ZGB (N-term)">ZGB (N-term)</option>
2970 <option value="ZQG (K)">ZQG (K)</option> 3006 <option value="ZQG (K)">ZQG (K)</option>
2971 <expand macro="list_string_san" name="mods"/> 3007 <expand macro="list_string_san" name="mods"/>
2972 </param> 3008 </param>
2973 <param argument="-presets" type="select" optional="true" label="Add predefined sets, as shortcut to manually specifying a lot of modifications" help=""> 3009 <param argument="-presets" type="select" label="Add predefined sets, as shortcut to manually specifying a lot of modifications" help="">
2974 <option value="none" selected="true">none</option> 3010 <option value="none" selected="true">none</option>
2975 <option value="N15">N15</option> 3011 <option value="N15">N15</option>
2976 <expand macro="list_string_san" name="presets"/> 3012 <expand macro="list_string_san" name="presets"/>
2977 </param> 3013 </param>
2978 <expand macro="adv_opts_macro"> 3014 <expand macro="adv_opts_macro">
2979 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> 3015 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
2980 <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 3016 <param argument="-test" type="hidden" value="False" label="Enables the test mode (needed for internal use only)" help="" optional="true">
2981 <expand macro="list_string_san" name="test"/> 3017 <expand macro="list_string_san" name="test"/>
2982 </param> 3018 </param>
2983 </expand> 3019 </expand>
2984 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> 3020 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
2985 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 3021 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
2993 </outputs> 3029 </outputs>
2994 <tests/> 3030 <tests/>
2995 <help><![CDATA[Applies a set of modifications to all PeptideIDs in an idXML file. 3031 <help><![CDATA[Applies a set of modifications to all PeptideIDs in an idXML file.
2996 3032
2997 3033
2998 For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_StaticModification.html]]></help> 3034 For more information, visit https://openms.de/doxygen/release/3.1.0/html/TOPP_StaticModification.html]]></help>
2999 <expand macro="references"/> 3035 <expand macro="references"/>
3000 </tool> 3036 </tool>