Mercurial > repos > galaxyp > openms_svmtheoreticalspectrumgeneratortrainer

comparison SvmTheoreticalSpectrumGeneratorTrainer.xml @ 7:e98ae1229a67 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:41:30 -0400
parents 6d9c00e778ff
children 94b81345543d
comparison
equal deleted inserted replaced
6:d4a5a5f3497f 7:e98ae1229a67
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SvmTheoreticalSpectrumGeneratorTrainer 13 <command detect_errors="aggressive"><![CDATA[SvmTheoreticalSpectrumGeneratorTrainer
14 14
15 #if $param_in_spectra: 15 #if $param_in_spectra:
16 -in_spectra $param_in_spectra 16 -in_spectra $param_in_spectra
17 #end if 17 #end if
18 #if $param_in_identifications: 18 #if $param_in_identifications:
230 #if $adv_opts.adv_opts_selector=='advanced': 230 #if $adv_opts.adv_opts_selector=='advanced':
231 #if $adv_opts.param_force: 231 #if $adv_opts.param_force:
232 -force 232 -force
233 #end if 233 #end if
234 #end if 234 #end if
235 </command> 235 ]]></command>
236 <inputs> 236 <inputs>
237 <param name="param_in_spectra" type="data" format="mzml" optional="False" label="Input Training Spectra in mzML" help="(-in_spectra) "/> 237 <param name="param_in_spectra" type="data" format="mzml" optional="False" label="Input Training Spectra in mzML" help="(-in_spectra) "/>
238 <param name="param_in_identifications" type="data" format="idxml" optional="False" label="Input file with corresponding sequences in idXML" help="(-in_identifications) "/> 238 <param name="param_in_identifications" type="data" format="idxml" optional="False" label="Input file with corresponding sequences in idXML" help="(-in_identifications) "/>
239 <param name="param_precursor_charge" type="integer" min="1" max="3" optional="True" value="2" label="Precursor charge state used for model training" help="(-precursor_charge) "/> 239 <param name="param_precursor_charge" type="integer" min="1" max="3" optional="True" value="2" label="Precursor charge state used for model training" help="(-precursor_charge) "/>
240 <param name="param_write_training_files" display="radio" type="boolean" truevalue="-write_training_files" falsevalue="" checked="false" optional="True" label="No models are trained but input training files for libSVM command line tools are produced" help="(-write_training_files) "/> 240 <param name="param_write_training_files" display="radio" type="boolean" truevalue="-write_training_files" falsevalue="" checked="false" optional="True" label="No models are trained but input training files for libSVM command line tools are produced" help="(-write_training_files) "/>
318 <data name="param_model_output_file" format="data"/> 318 <data name="param_model_output_file" format="data"/>
319 </outputs> 319 </outputs>
320 <help>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator 320 <help>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator
321 321
322 322
323 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SvmTheoreticalSpectrumGeneratorTrainer.html</help> 323 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SvmTheoreticalSpectrumGeneratorTrainer.html</help>
324 </tool> 324 </tool>