Mercurial > repos > galaxyp > openms_targetedfileconverter

diff TargetedFileConverter.xml @ 9:6562463bf496 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:21:48 +0000
parents 51b9c2d5b4c3
children 9c70a651a53e
line wrap: on
line diff
--- a/TargetedFileConverter.xml	Thu Sep 24 12:14:35 2020 +0000
+++ b/TargetedFileConverter.xml	Tue Oct 13 20:21:48 2020 +0000
@@ -42,7 +42,7 @@
   </configfiles>
   <inputs>
     <param name="in" argument="-in" type="data" format="mrm,pqp,tabular,traml" optional="false" label="Input file to convert" help="See http://www.openms.de/current_doxygen/html/UTILS_TargetedFileConverter.html for format of OpenSWATH transition TSV file or SpectraST MRM file select mrm,pqp,tabular,traml data sets(s)"/>
-    <param name="out_type" argument="-out_type" display="radio" type="select" optional="false" label="Output file type -- default: determined from file extension or content" help="Note: that not all conversion paths work or make sense">
+    <param name="out_type" argument="-out_type" display="radio" type="select" optional="false" label="Output file type -- default: determined from file extension or content" help="Note: not all conversion paths work or make sense">
       <option value="TraML">traml</option>
       <option value="pqp">pqp</option>
       <option value="tsv">tabular (tsv)</option>
@@ -60,12 +60,12 @@
     </section>
     <expand macro="adv_opts_macro">
       <param name="legacy_traml_id" argument="-legacy_traml_id" type="boolean" truevalue="true" falsevalue="false" checked="false" label="PQP to TraML: Should legacy TraML IDs be used?" help=""/>
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -88,6 +88,6 @@
   <help><![CDATA[Converts different transition files for targeted proteomics / metabolomics analysis.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_TargetedFileConverter.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_TargetedFileConverter.html]]></help>
   <expand macro="references"/>
 </tool>