Mercurial > repos > galaxyp > openms_textexporter

comparison TextExporter.xml @ 1:d06df685f78c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:50:36 -0400
parents be5c2f82c8ef
children 33e848694dc1
comparison
equal deleted inserted replaced
0:be5c2f82c8ef 1:d06df685f78c
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [File Handling]--> 3 <!--Proposed Tool Section: [File Handling]-->
4 <tool id="TextExporter" name="TextExporter" version="2.1.0"> 4 <tool id="TextExporter" name="TextExporter" version="2.2.0">
5 <description>Exports various XML formats to a text file.</description> 5 <description>Exports various XML formats to a text file.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">TextExporter</token> 7 <token name="@EXECUTABLE@">TextExporter</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
23 #end if 23 #end if
24 #if $param_replacement: 24 #if $param_replacement:
25 -replacement "$param_replacement" 25 -replacement "$param_replacement"
26 #end if 26 #end if
27 #if $param_quoting: 27 #if $param_quoting:
28 -quoting $param_quoting 28 -quoting
29 #if " " in str($param_quoting):
30 "$param_quoting"
31 #else
32 $param_quoting
33 #end if
29 #end if 34 #end if
30 #if $param_no_ids: 35 #if $param_no_ids:
31 -no_ids 36 -no_ids
32 #end if 37 #end if
33 #if $param_feature_minimal: 38 #if $param_feature_minimal:
59 #end if 64 #end if
60 #if $param_consensus_features: 65 #if $param_consensus_features:
61 -consensus:features $param_consensus_features 66 -consensus:features $param_consensus_features
62 #end if 67 #end if
63 #if $param_consensus_sorting_method: 68 #if $param_consensus_sorting_method:
64 -consensus:sorting_method $param_consensus_sorting_method 69 -consensus:sorting_method
70 #if " " in str($param_consensus_sorting_method):
71 "$param_consensus_sorting_method"
72 #else
73 $param_consensus_sorting_method
74 #end if
65 #end if 75 #end if
66 #if $param_consensus_sort_by_maps: 76 #if $param_consensus_sort_by_maps:
67 -consensus:sort_by_maps 77 -consensus:sort_by_maps
68 #end if 78 #end if
69 #if $param_consensus_sort_by_size: 79 #if $param_consensus_sort_by_size:
74 -force 84 -force
75 #end if 85 #end if
76 #end if 86 #end if
77 </command> 87 </command>
78 <inputs> 88 <inputs>
79 <param name="param_in" type="data" format="featurexml,consensusxml,mzml,idxml" optional="False" label="Input file" help="(-in) "/> 89 <param name="param_in" type="data" format="featurexml,consensusxml,idxml,mzml" optional="False" label="Input file" help="(-in) "/>
80 <param name="param_separator" type="text" size="30" label="The used separator character(s); if not set the 'tab' character is used" help="(-separator) "> 90 <param name="param_separator" type="text" size="30" label="The used separator character(s); if not set the 'tab' character is used" help="(-separator) ">
81 <sanitizer> 91 <sanitizer>
82 <valid initial="string.printable"> 92 <valid initial="string.printable">
83 <remove value="'"/> 93 <remove value="'"/>
84 <remove value="&quot;"/> 94 <remove value="&quot;"/>