Mercurial > repos > galaxyp > openms_ticcalculator

comparison TICCalculator.xml @ 7:488ea525e0b1 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:22:24 -0400
parents 11fc1eb69276
children 32667824b653
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6:71220e640d0c 7:488ea525e0b1
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>TICCalculator 13 <command detect_errors="aggressive"><![CDATA[TICCalculator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_read_method: 18 #if $param_read_method:
35 #if $adv_opts.param_force: 35 #if $adv_opts.param_force:
36 -force 36 -force
37 #end if 37 #end if
38 #end if 38 #end if
39 &gt; $param_stdout 39 &gt; $param_stdout
40 </command> 40 ]]></command>
41 <inputs> 41 <inputs>
42 <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/> 42 <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/>
43 <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) "> 43 <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) ">
44 <option value="regular" selected="true">regular</option> 44 <option value="regular" selected="true">regular</option>
45 <option value="indexed">indexed</option> 45 <option value="indexed">indexed</option>
60 <data name="param_stdout" format="txt" label="Output from stdout"/> 60 <data name="param_stdout" format="txt" label="Output from stdout"/>
61 </outputs> 61 </outputs>
62 <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking). 62 <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).
63 63
64 64
65 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TICCalculator.html</help> 65 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_TICCalculator.html</help>
66 </tool> 66 </tool>