Mercurial > repos > galaxyp > openms_ticcalculator
diff TICCalculator.xml @ 1:1373f6071423 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:48:23 -0400 |
| parents | cb4738f26b96 |
| children | 11fc1eb69276 |
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--- a/TICCalculator.xml Wed Mar 01 12:51:22 2017 -0500 +++ b/TICCalculator.xml Wed Aug 09 09:48:23 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="TICCalculator" name="TICCalculator" version="2.1.0"> +<tool id="TICCalculator" name="TICCalculator" version="2.2.0.1"> <description>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).</description> <macros> <token name="@EXECUTABLE@">TICCalculator</token> @@ -16,10 +16,20 @@ -in $param_in #end if #if $param_read_method: - -read_method $param_read_method + -read_method + #if " " in str($param_read_method): + "$param_read_method" + #else + $param_read_method + #end if #end if #if $param_loadData: - -loadData $param_loadData + -loadData + #if " " in str($param_loadData): + "$param_loadData" + #else + $param_loadData + #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: @@ -29,7 +39,7 @@ > $param_stdout </command> <inputs> - <param name="param_in" type="data" format="mgf,mzml,mzxml,tabular,featurexml,consensusxml" optional="False" label="Input file to convert" help="(-in) "/> + <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/> <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) "> <option value="regular" selected="true">regular</option> <option value="indexed">indexed</option> @@ -47,10 +57,10 @@ </expand> </inputs> <outputs> - <data name="param_stdout" format="text" label="Output from stdout"/> + <data name="param_stdout" format="txt" label="Output from stdout"/> </outputs> <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking). -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/doxygen/parameters/output/UTILS_TICCalculator.html</help> +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TICCalculator.html</help> </tool>