Mercurial > repos > galaxyp > openms_ticcalculator
diff TICCalculator.xml @ 0:cb4738f26b96 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 12:51:22 -0500 |
parents | |
children | 1373f6071423 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TICCalculator.xml Wed Mar 01 12:51:22 2017 -0500 @@ -0,0 +1,56 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [Utilities]--> +<tool id="TICCalculator" name="TICCalculator" version="2.1.0"> + <description>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).</description> + <macros> + <token name="@EXECUTABLE@">TICCalculator</token> + <import>macros.xml</import> + </macros> + <expand macro="references"/> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>TICCalculator + +#if $param_in: + -in $param_in +#end if +#if $param_read_method: + -read_method $param_read_method +#end if +#if $param_loadData: + -loadData $param_loadData +#end if +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +> $param_stdout +</command> + <inputs> + <param name="param_in" type="data" format="mgf,mzml,mzxml,tabular,featurexml,consensusxml" optional="False" label="Input file to convert" help="(-in) "/> + <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) "> + <option value="regular" selected="true">regular</option> + <option value="indexed">indexed</option> + <option value="indexed_parallel">indexed_parallel</option> + <option value="streaming">streaming</option> + <option value="cached">cached</option> + <option value="cached_parallel">cached_parallel</option> + </param> + <param name="param_loadData" display="radio" type="select" optional="False" value="true" label="Whether to actually load and decode the binary data (or whether to skip decoding the binary data)" help="(-loadData) "> + <option value="true" selected="true">true</option> + <option value="false">false</option> + </param> + <expand macro="advanced_options"> + <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_stdout" format="text" label="Output from stdout"/> + </outputs> + <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking). + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/doxygen/parameters/output/UTILS_TICCalculator.html</help> +</tool>