Mercurial > repos > galaxyp > openms_tofcalibration

diff TOFCalibration.xml @ 7:0d91d2be68be draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:39:17 -0400
parents 0ca1ea28f6ae
children 40a101cabd0e
line wrap: on
line diff
--- a/TOFCalibration.xml	Tue Mar 20 15:03:07 2018 -0400
+++ b/TOFCalibration.xml	Fri May 17 04:39:17 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>TOFCalibration
+  <command detect_errors="aggressive"><![CDATA[TOFCalibration
 
 #if $param_in:
   -in $param_in
@@ -158,7 +158,7 @@
   -algorithm:PeakPicker:SignalToNoiseEstimationParameter:noise_for_empty_window $adv_opts.param_algorithm_PeakPicker_SignalToNoiseEstimationParameter_noise_for_empty_window
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input peak or raw data file" help="(-in) "/>
     <param name="param_ext_calibrants" type="data" format="mzml" optional="False" label="input file containing the external calibrant spectra (peak or raw data)" help="(-ext_calibrants) "/>
@@ -216,5 +216,5 @@
   <help>Applies time of flight calibration.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_TOFCalibration.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_TOFCalibration.html</help>
 </tool>