Mercurial > repos > galaxyp > openms_transformationevaluation

comparison TransformationEvaluation.xml @ 13:76ae6a5181b5 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author galaxyp
date Thu, 01 Dec 2022 19:04:34 +0000
parents 24d0298006e1
children
comparison
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12:995b0943817a 13:76ae6a5181b5
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="TransformationEvaluation" name="TransformationEvaluation" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="20.05"> 4 <tool id="TransformationEvaluation" name="TransformationEvaluation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
5 <description>Applies a transformation to a range of values</description> 5 <description>Applies a transformation to a range of values</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">TransformationEvaluation</token> 7 <token name="@EXECUTABLE@">TransformationEvaluation</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 <import>macros_autotest.xml</import>
10 <import>macros_test.xml</import>
11 </macros> 9 </macros>
12 <expand macro="requirements"/> 10 <expand macro="requirements"/>
13 <expand macro="stdio"/> 11 <expand macro="stdio"/>
14 <command detect_errors="exit_code"><![CDATA[@QUOTE_FOO@ 12 <command detect_errors="exit_code"><![CDATA[@QUOTE_FOO@
15 @EXT_FOO@ 13 @EXT_FOO@
48 <configfiles> 46 <configfiles>
49 <inputs name="args_json" data_style="paths"/> 47 <inputs name="args_json" data_style="paths"/>
50 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 48 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
51 </configfiles> 49 </configfiles>
52 <inputs> 50 <inputs>
53 <param name="in" argument="-in" type="data" format="trafoxml" optional="false" label="Input file containing the transformation description" help=" select trafoxml data sets(s)"/> 51 <param argument="-in" type="data" format="trafoxml" optional="false" label="Input file containing the transformation description" help=" select trafoxml data sets(s)"/>
54 <param name="min" argument="-min" type="float" optional="true" value="0.0" label="Minimum value to transform" help=""/> 52 <param argument="-min" type="float" optional="true" value="0.0" label="Minimum value to transform" help=""/>
55 <param name="max" argument="-max" type="float" optional="true" value="0.0" label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" help=""/> 53 <param argument="-max" type="float" optional="true" value="0.0" label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" help=""/>
56 <param name="step" argument="-step" type="float" optional="true" min="0.001" value="1.0" label="Step size between 'min' and 'max'" help=""/> 54 <param argument="-step" type="float" optional="true" min="0.001" value="1.0" label="Step size between 'min' and 'max'" help=""/>
57 <expand macro="adv_opts_macro"> 55 <expand macro="adv_opts_macro">
58 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> 56 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
59 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 57 <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
60 <expand macro="list_string_san"/> 58 <expand macro="list_string_san" name="test"/>
61 </param> 59 </param>
62 </expand> 60 </expand>
63 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> 61 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
64 <option value="out_FLAG">out (Output file containing original and transformed values; if empty, output is written to the screen)</option> 62 <option value="out_FLAG">out (Output file containing original and transformed values; if empty, output is written to the screen)</option>
65 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
74 </data> 72 </data>
75 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd"> 73 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd">
76 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> 74 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter>
77 </data> 75 </data>
78 </outputs> 76 </outputs>
79 <tests> 77 <tests><test expect_num_outputs="1"><!-- just chosen an arbitrary input and autgenerated output-->
80 <expand macro="autotest_TransformationEvaluation"/> 78 <param name="adv_opts|test" value="true"/>
81 <expand macro="manutest_TransformationEvaluation"/> 79 <param name="in" ftype="trafoxml" value="FileInfo_16_input.trafoXML"/>
82 </tests> 80 <param name="OPTIONAL_OUTPUTS" value="out_FLAG"/>
81 <output name="out" ftype="trafoxml" value="TransformationEvaluation.trafoXML" compare="sim_size" delta="100000000"/>
82 </test>
83 </tests>
83 <help><![CDATA[Applies a transformation to a range of values 84 <help><![CDATA[Applies a transformation to a range of values
84 85
85 86
86 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_TransformationEvaluation.html]]></help> 87 For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_TransformationEvaluation.html]]></help>
87 <expand macro="references"/> 88 <expand macro="references"/>
88 </tool> 89 </tool>