Mercurial > repos > galaxyp > openms_xmlvalidator

comparison XMLValidator.xml @ 7:68c2fe7ee7d4 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:46:49 -0400
parents b19fb08ca900
children dba6eb59efc8
comparison
equal deleted inserted replaced
6:23ee127a810b 7:68c2fe7ee7d4
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>XMLValidator 13 <command detect_errors="aggressive"><![CDATA[XMLValidator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_schema: 18 #if $param_schema:
22 #if $adv_opts.param_force: 22 #if $adv_opts.param_force:
23 -force 23 -force
24 #end if 24 #end if
25 #end if 25 #end if
26 &gt; $param_stdout 26 &gt; $param_stdout
27 </command> 27 ]]></command>
28 <inputs> 28 <inputs>
29 <param name="param_in" type="data" format="mzml,mzData,featurexml,mzid,idxml,consensusxml,mzxml,txt,pepxml,traml,xml" optional="False" label="file to validate" help="(-in) "/> 29 <param name="param_in" type="data" format="mzml,mzData,featurexml,mzid,idxml,consensusxml,mzxml,txt,pepxml,traml,xml" optional="False" label="file to validate" help="(-in) "/>
30 <param name="param_schema" type="data" format="txt" optional="True" label="schema to validate against" help="(-schema) &lt;br&gt;If no schema is given, the file is validated against the latest schema of the file type"/> 30 <param name="param_schema" type="data" format="txt" optional="True" label="schema to validate against" help="(-schema) &lt;br&gt;If no schema is given, the file is validated against the latest schema of the file type"/>
31 <expand macro="advanced_options"> 31 <expand macro="advanced_options">
32 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 32 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
36 <data name="param_stdout" format="txt" label="Output from stdout"/> 36 <data name="param_stdout" format="txt" label="Output from stdout"/>
37 </outputs> 37 </outputs>
38 <help>Validates XML files against an XSD schema. 38 <help>Validates XML files against an XSD schema.
39 39
40 40
41 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_XMLValidator.html</help> 41 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_XMLValidator.html</help>
42 </tool> 42 </tool>