Mercurial > repos > galaxyp > openms_xtandemadapter

annotate tool-data/pepnovo_models.loc.sample @ 12:1add9bacdccd draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:45:53 +0000
parents 9e16ba5b88e8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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10
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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1 # This is a sample file distributed with Galaxy that enables tools
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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2 # to use pepnovo models
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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3 # The file has three tab separated columns: name, value, and path.
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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4 # The idea is that there are a number of models in a directory:
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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5 # - each model directory has a unique name (columns 2 and 0)
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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6 # - each model can contain a set of models (column 1)
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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7 #
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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8 # The following example works fo the default models from
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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10 # chars and replace DIR_TO_PEPNOVO_MODELS)
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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11
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS
9e16ba5b88e8 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS