Mercurial > repos > galaxyp > openms_xtandemadapter

comparison XTandemAdapter.xml @ 11:213368382d6c draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e9568c650259d95b230d1a243e90f73a19564c2"
author galaxyp
date Thu, 24 Sep 2020 09:59:00 +0000
parents 9e16ba5b88e8
children 1add9bacdccd
comparison
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10:9e16ba5b88e8 11:213368382d6c
5322 <option value="ZGB (N-term)">ZGB (N-term)</option> 5322 <option value="ZGB (N-term)">ZGB (N-term)</option>
5323 <expand macro="list_string_san"/> 5323 <expand macro="list_string_san"/>
5324 </param> 5324 </param>
5325 <param name="minimum_fragment_mz" argument="-minimum_fragment_mz" type="float" optional="true" value="150.0" label="Minimum fragment m/z" help=""/> 5325 <param name="minimum_fragment_mz" argument="-minimum_fragment_mz" type="float" optional="true" value="150.0" label="Minimum fragment m/z" help=""/>
5326 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> 5326 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help="">
5327 <option value="Lys-C/P">Lys-C/P</option>
5328 <option value="PepsinA">PepsinA</option>
5329 <option value="TrypChymo">TrypChymo</option>
5330 <option value="Trypsin" selected="true">Trypsin</option>
5331 <option value="unspecific cleavage">unspecific cleavage</option>
5332 <option value="Trypsin/P">Trypsin/P</option>
5333 <option value="V8-DE">V8-DE</option>
5334 <option value="V8-E">V8-E</option>
5335 <option value="leukocyte elastase">leukocyte elastase</option>
5327 <option value="Lys-C">Lys-C</option> 5336 <option value="Lys-C">Lys-C</option>
5328 <option value="Lys-N">Lys-N</option> 5337 <option value="Lys-N">Lys-N</option>
5329 <option value="Lys-C/P">Lys-C/P</option>
5330 <option value="PepsinA">PepsinA</option>
5331 <option value="Trypsin" selected="true">Trypsin</option>
5332 <option value="Chymotrypsin">Chymotrypsin</option> 5338 <option value="Chymotrypsin">Chymotrypsin</option>
5333 <option value="Chymotrypsin/P">Chymotrypsin/P</option> 5339 <option value="Chymotrypsin/P">Chymotrypsin/P</option>
5334 <option value="unspecific cleavage">unspecific cleavage</option>
5335 <option value="leukocyte elastase">leukocyte elastase</option>
5336 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
5337 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
5338 <option value="2-iodobenzoate">2-iodobenzoate</option>
5339 <option value="Asp-N/B">Asp-N/B</option> 5340 <option value="Asp-N/B">Asp-N/B</option>
5340 <option value="Asp-N_ambic">Asp-N_ambic</option> 5341 <option value="Asp-N_ambic">Asp-N_ambic</option>
5341 <option value="CNBr">CNBr</option> 5342 <option value="CNBr">CNBr</option>
5342 <option value="Formic_acid">Formic_acid</option> 5343 <option value="Formic_acid">Formic_acid</option>
5343 <option value="Arg-C/P">Arg-C/P</option> 5344 <option value="Arg-C/P">Arg-C/P</option>
5344 <option value="Arg-C">Arg-C</option> 5345 <option value="Arg-C">Arg-C</option>
5345 <option value="TrypChymo">TrypChymo</option> 5346 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
5346 <option value="Trypsin/P">Trypsin/P</option> 5347 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
5347 <option value="V8-DE">V8-DE</option> 5348 <option value="2-iodobenzoate">2-iodobenzoate</option>
5348 <option value="V8-E">V8-E</option>
5349 <option value="Asp-N">Asp-N</option> 5349 <option value="Asp-N">Asp-N</option>
5350 <expand macro="list_string_san"/> 5350 <expand macro="list_string_san"/>
5351 </param> 5351 </param>
5352 <param name="missed_cleavages" argument="-missed_cleavages" type="integer" optional="true" value="1" label="Number of possible cleavage sites missed by the enzyme" help=""/> 5352 <param name="missed_cleavages" argument="-missed_cleavages" type="integer" optional="true" value="1" label="Number of possible cleavage sites missed by the enzyme" help=""/>
5353 <param name="semi_cleavage" argument="-semi_cleavage" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Require only peptide end to have a valid cleavage site, not both" help=""/> 5353 <param name="semi_cleavage" argument="-semi_cleavage" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Require only peptide end to have a valid cleavage site, not both" help=""/>