Mercurial > repos > galaxyp > openms_xtandemadapter

comparison XTandemAdapter.xml @ 2:22e9bb7d151a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 1e51bed3a1c10c67ef0404216608e9333db04c64
author galaxyp
date Wed, 18 Oct 2017 15:22:33 -0400
parents cd0746ee4796
children 7b5457bd6112
comparison
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1:cd0746ee4796 2:22e9bb7d151a
130 <option value="ppm">ppm</option> 130 <option value="ppm">ppm</option>
131 <option value="Da" selected="true">Da</option> 131 <option value="Da" selected="true">Da</option>
132 </param> 132 </param>
133 <param name="param_max_precursor_charge" type="integer" min="0" optional="True" value="4" label="Maximum precursor charge ('0' to use X! Tandem default)" help="(-max_precursor_charge) "/> 133 <param name="param_max_precursor_charge" type="integer" min="0" optional="True" value="4" label="Maximum precursor charge ('0' to use X! Tandem default)" help="(-max_precursor_charge) "/>
134 <param name="param_no_isotope_error" display="radio" type="boolean" truevalue="-no_isotope_error" falsevalue="" checked="false" optional="True" label="By default, misassignment to the first and second isotopic 13C peak are also considered" help="(-no_isotope_error) Set this flag to disable"/> 134 <param name="param_no_isotope_error" display="radio" type="boolean" truevalue="-no_isotope_error" falsevalue="" checked="false" optional="True" label="By default, misassignment to the first and second isotopic 13C peak are also considered" help="(-no_isotope_error) Set this flag to disable"/>
135 <repeat name="rep_param_fixed_modifications" min="0" max="1" title="param_fixed_modifications"> 135 <repeat name="rep_param_fixed_modifications" min="0" title="param_fixed_modifications">
136 <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using Unimod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> 136 <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using Unimod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'">
137 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 137 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
138 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 138 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
139 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 139 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
140 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 140 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>