Mercurial > repos > galaxyp > openms_xtandemadapter

comparison readme.md @ 5:c8b225c69a7f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8a95bc868914fb41c7452907f73a9273b03286ab
author galaxyp
date Thu, 11 Jan 2018 17:52:13 -0500
parents 61bc5fb43781
children b09039836cb1
comparison
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4:7b5457bd6112 5:c8b225c69a7f
115 #end if 115 #end if
116 116
117 [...] 117 [...]
118 ]]> 118 ]]>
119 ``` 119 ```
120 120
121 * In Xtandem Converter and probably in others:
122
123 ```
124 #if str($param_missed_cleavages) != '':
125 ```
126 This is because integers needs to be compared as string otherwise `0` becomes `false`.
127
121 * In `MetaProSIP.xml` add `R` as a requirement: 128 * In `MetaProSIP.xml` add `R` as a requirement:
122 129
123 ``` 130 ```
124 <expand macro="requirements"> 131 <expand macro="requirements">
125 <requirement type="package" version="3.3.1">r-base</requirement> 132 <requirement type="package" version="3.3.1">r-base</requirement>
162 </test> 169 </test>
163 </tests> 170 </tests>
164 ``` 171 ```
165 172
166 173
167 * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`: 174 * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in
175 by the automatic conversion step and are therefore in `SKIP_TOOLS_FILES.txt`:
168 * SeedListGenerator 176 * SeedListGenerator
169 * SpecLibSearcher 177 * SpecLibSearcher
170 * MapAlignerIdentification 178 * MapAlignerIdentification
171 * MapAlignerPoseClustering 179 * MapAlignerPoseClustering
172 * MapAlignerSpectrum 180 * MapAlignerSpectrum