Mercurial > repos > galaxyp > openms_xtandemadapter

diff XTandemAdapter.xml @ 8:9459f73208e0 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:12:20 -0400
parents b09039836cb1
children 9e16ba5b88e8
line wrap: on
line diff
--- a/XTandemAdapter.xml	Tue Mar 20 14:44:00 2018 -0400
+++ b/XTandemAdapter.xml	Wed May 15 08:12:20 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>XTandemAdapter
+  <command detect_errors="aggressive"><![CDATA[XTandemAdapter
 -xtandem_executable xtandem
 
 #if $param_in:
@@ -114,7 +114,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file containing MS2 spectra" help="(-in) "/>
     <param name="param_database" type="data" format="fasta" optional="False" label="FASTA file or pro file" help="(-database) Non-existing relative file-names are looked up via'OpenMS.ini:id_db_dir'"/>
@@ -5243,5 +5243,5 @@
   <help>Annotates MS/MS spectra using X! Tandem.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_XTandemAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_XTandemAdapter.html</help>
 </tool>