Mercurial > repos > galaxyp > package_peptideshaker_0_20_1

diff tool_dependencies.xml @ 0:86ea0b6c4847 draft

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Initial commit.
author galaxyp
date Mon, 16 Sep 2013 13:25:17 -0400
parents
children 856cf4a8d9e3
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 16 13:25:17 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="PeptideShaker" version="0.20.1">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action>
+        <action type="shell_command">chmod -R o+w resources</action>
+        <action type="shell_command">wget https://gist.github.com/jmchilton/5002161/raw/f1fe76d6e6eed99a768ed0b9f41c2d0a6a4b24b7/PeptideShaker</action>
+        <action type="shell_command">chmod +x PeptideShaker</action>
+        <action type="move_directory_files">
+          <source_directory>.</source_directory>
+          <destination_directory>$INSTALL_DIR/</destination_directory>
+        </action>
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+        </action>                
+      </actions>
+    </install>
+    <readme>
+      Install Galaxy package application for PeptideShaker 0.20.1.
+    </readme>
+  </package>
+</tool_dependency>