Mercurial > repos > galaxyp > package_peptideshaker_0_20_1

view tool_dependencies.xml @ 1:856cf4a8d9e3 draft

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Update.
author galaxyp
date Mon, 16 Sep 2013 13:33:41 -0400
parents 86ea0b6c4847
children cfd55b6c4fa2
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<?xml version="1.0"?>
<tool_dependency>
  <package name="PeptideShaker" version="0.20.1">
    <install version="1.0">
      <actions>
        <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action>
        <action type="shell_command">chmod -R o+w resources</action>
        <action type="shell_command">wget https://gist.github.com/jmchilton/5002161/raw/f1fe76d6e6eed99a768ed0b9f41c2d0a6a4b24b7/PeptideShaker</action>
        <action type="shell_command">wget https://gist.github.com/jmchilton/5002161/raw/8a17d5fb589984365284e55a98a455c2b47da54f/PeptideShakerCLI</action>
        <action type="shell_command">chmod +x PeptideShaker</action>
        <action type="shell_command">chmod +x PeptideShakerCLI</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR/</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
        </action>                
      </actions>
    </install>
    <readme>
      Install Galaxy package application for PeptideShaker 0.20.1.
    </readme>
  </package>
</tool_dependency>