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view macros.xml @ 2:5b5a9f59e2c7 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery commit 8b553bb3e585b03c670a3689d4fe6eef7e464407"
author galaxyp
date Mon, 15 Mar 2021 12:52:03 +0000
parents 528bcf03e561
children 962599ac5406
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 <macros>
    <token name="@TOOL_VERSION@">1.6.2</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="modifications">
        <option value="1">HexNAc of T (203.07937251951) modaa</option>
        <option value="2">HexNAc of S (203.07937251951) modaa</option>
        <option value="3">Propionyl of peptide N-term light (56.02621474784) modn_peptide</option>
        <option value="4">iTRAQ 8-plex of K (304.19903946116) modaa</option>
        <option value="5">Dimethylation of K 2H(6) 13C(2) (36.075670278260006) modaa</option>
        <!--<option value="6">Carbamidomethylation of C (57.02146372057) modaa</option>-->
        <option value="7">Dioxidation of M (31.98982923912) modaa</option>
        <option value="8">Guanidination of K (42.02179807374) modaa</option>
        <option value="9">S-nitrosylation (28.99016359229) modaa</option>
        <option value="10">TMT 6-plex of K (229.16293213472) modaa</option>
        <option value="11">Propionyl of peptide N-term heavy (59.03627926124) modn_peptide</option>
        <option value="12">Formylation of protein N-term (27.99491461956) modn_protein</option>
        <option value="13">TMT 10-plex of K+6 (235.18306116152) modaa</option>
        <option value="14">TMT 11-plex of K+6 (235.18306116152) modaa</option>
        <option value="15">TMT 10-plex of K+8 (237.17713094832) modaa</option>
        <option value="16">TMT 11-plex of K+4 (233.18803911764) modaa</option>
        <option value="17">Diiodination of Y (251.79329593586) modaa</option>
        <option value="18">TMT 10-plex of K+4 (233.18803911764) modaa</option>
        <option value="19">ICPL10 of peptide N-term (115.06669973029) modn_peptide</option>
        <option value="20">Amidation of the protein C-term (-0.9840155826899988) modc_protein</option>
        <option value="21">Acetylation of peptide N-term (42.0105646837) modn_peptide</option>
        <option value="22">Palmitoylation of protein N-term (238.22966558166) modn_protein</option>
        <option value="23">ICAT-O (227.12699141827) modaa</option>
        <option value="24">TMT 2-plex of peptide N-term (225.15583272792) modn_peptide</option>
        <option value="25">TMT 11-plex of K+8 (237.17713094832) modaa</option>
        <option value="26">Label of K 2H(4) (4.025106982920001) modaa</option>
        <option value="27">Isoleucine 13C(6) 15N(1) (7.017163920200005) modaa</option>
        <option value="28">Arginine 13C(6) (6.020129026799992) modaa</option>
        <option value="29">Acetylation of K (42.0105646837) modaa</option>
        <option value="30">Dimethylation of peptide N-term 2H(6) 13C(2) (36.075670278260006) modn_peptide</option>
        <option value="31">ICPL0 of K (105.02146372057) modaa</option>
        <option value="32">Trimethylation of protein N-term A (42.04695019242) modn_protein</option>
        <option value="33">Thioacyl of peptide N-term (87.99828574784) modn_peptide</option>
        <option value="34">Trideuterated Methyl Ester of R (17.034480301330003) modaa</option>
        <option value="35">ICPL4 of peptide N-term (109.04657070349) modn_peptide</option>
        <option value="36">4-Hydroxyproline (83.07349929343) modaa</option>
        <option value="37">Hex(5) HexNAc(4) NeuAc(2) of N (2204.77244018348) modaa</option>
        <option value="38">Palmitoylation of T (238.22966558166) modaa</option>
        <option value="39">Palmitoylation of S (238.22966558166) modaa</option>
        <option value="40">Methylation of K (14.01565006414) modaa</option>
        <option value="41">Hexose of K (162.0528234185) modaa</option>
        <option value="42">Methylation of E (14.01565006414) modaa</option>
        <option value="43">Lysine 13C(6) (6.020129026799992) modaa</option>
        <option value="44">Palmitoylation of K (238.22966558166) modaa</option>
        <option value="45">Methylation of C (14.01565006414) modaa</option>
        <option value="46">Sodium adduct to D (21.98194424883) modaa</option>
        <option value="47">Methylation of D (14.01565006414) modaa</option>
        <option value="48">Pyrolidone from carbamidomethylated C (-17.02654910101) modnaa_peptide</option>
        <option value="49">Sodium adduct to E (21.98194424883) modaa</option>
        <option value="50">ICPL6 of peptide N-term (111.04159274737) modn_peptide</option>
        <option value="51">Dehydration of S (-18.0105646837) modaa</option>
        <option value="52">Palmitoylation of C (238.22966558166) modaa</option>
        <option value="53">Propionamide of C (71.03711378471) modaa</option>
        <option value="54">mTRAQ of peptide N-term light (140.094963014) modn_peptide</option>
        <option value="55">Propionyl of K light (56.02621474784) modaa</option>
        <option value="56">Dehydration of T (-18.0105646837) modaa</option>
        <option value="57">Hex(5) HexNAc(4) NeuAc(2) Na of N (2226.75438443231) modaa</option>
        <option value="58">Lysine 2H(4) (4.025106982920001) modaa</option>
        <option value="59">ICAT-9 (236.15718495847) modaa</option>
        <option value="60">Dimethylation of peptide N-term (28.03130012828) modn_peptide</option>
        <option value="61">Propionamide of K (71.03711378471) modaa</option>
        <option value="62">TMT 10-plex of peptide N-term (229.16293213472) modn_peptide</option>
        <option value="63">Methylation of S (14.01565006414) modaa</option>
        <option value="64">Methylation of R (14.01565006414) modaa</option>
        <option value="65">Homoserine of peptide C-term M (-29.992806444580005) modcaa_peptide</option>
        <option value="66">Proline 13C(5) (5.016774189000003) modaa</option>
        <option value="67">Farnesylation of C (204.18780076968) modaa</option>
        <option value="68">Trimethylation of K (42.04695019242) modaa</option>
        <option value="69">iTRAQ 8-plex of peptide N-term (304.19903946116) modn_peptide</option>
        <option value="70">FormylMet of protein N-term (159.03539953255) modn_protein</option>
        <option value="71">Dimethylation of K (28.03130012828) modaa</option>
        <option value="72">mTRAQ of K 13C(3) 15N (144.1020624208) modaa</option>
        <option value="73">Carboxymethylation of C (58.00547930326) modaa</option>
        <option value="74">Guanidination of peptide N-term (42.02179807374) modn_peptide</option>
        <option value="75">Acetylation of protein N-term (42.0105646837) modn_protein</option>
        <option value="76">Trimethylation of R (42.04695019242) modaa</option>
        <option value="77">Pyrolidone from E (-18.0105646837) modnaa_peptide</option>
        <option value="78">Dimethylation of R (28.03130012828) modaa</option>
        <option value="79">TMT 2-plex of K (225.15583272792) modaa</option>
        <option value="80">Pyrolidone from Q (-17.02654910101) modnaa_peptide</option>
        <option value="81">18O(1) of peptide C-term (2.0042463804400015) modc_peptide</option>
        <option value="82">iodoTMT 6-plex of C (329.22659502044) modaa</option>
        <option value="83">18O(2) of peptide C-term (4.008492760880003) modc_peptide</option>
        <option value="84">Acetaldehyde +26 (26.01565006414) modn_peptide</option>
        <option value="85">Formylation of K (27.99491461956) modaa</option>
        <option value="86">Dioxidation of W (31.98982923912) modaa</option>
        <option value="87">mTRAQ of K light (140.094963014) modaa</option>
        <option value="88">Ubiquitination of K (114.04292744114) modaa</option>
        <option value="89">TMT 11-plex of peptide N-term (229.16293213472) modn_peptide</option>
        <option value="90">Formylation of T (27.99491461956) modaa</option>
        <option value="91">Nethylmaleimide of C (125.04767846841) modaa</option>
        <option value="92">Formylation of S (27.99491461956) modaa</option>
        <option value="93">iTRAQ 8-plex of Y (304.19903946116) modaa</option>
        <option value="94">ICPL4 of K (109.04657070349) modaa</option>
        <option value="95">Formylation of peptide N-term (27.99491461956) modn_peptide</option>
        <option value="96">mTRAQ of peptide N-term 13C(6) 15N(2) (148.1091618276) modn_peptide</option>
        <option value="97">TMT 6-plex of peptide N-term (229.16293213472) modn_peptide</option>
        <option value="98">Carbamilation of K (43.00581365643) modaa</option>
        <option value="99">mTRAQ of 13C(6) 15N(2) (148.1091618276) modaa</option>
        <option value="100">SUMO-2/3 Q87R (471.20776092011) modaa</option>
        <option value="101">iTRAQ 4-plex of Y (144.1020624208) modaa</option>
        <option value="102">Dimethylation of peptide N-term 2H(4) (32.0564071112) modn_peptide</option>
        <option value="103">iTRAQ 4-plex of K (144.1020624208) modaa</option>
        <option value="104">TMT 11-plex of K (229.16293213472) modaa</option>
        <option value="105">Sulfation of Y (79.95681485867999) modaa</option>
        <option value="106">Sulfation of S (79.95681485867999) modaa</option>
        <option value="107">Sulfation of T (79.95681485867999) modaa</option>
        <option value="108">TMT 10-plex of K (229.16293213472) modaa</option>
        <option value="109">Oxidation of C (15.99491461956) modaa</option>
        <option value="110">Amidation of the peptide C-term (-0.9840155826899988) modc_peptide</option>
        <option value="111">Carbamilation of protein N-term (43.00581365643) modn_protein</option>
        <option value="112">ICPL6 of K (111.04159274737) modaa</option>
        <option value="113">Propionamide of peptide N-term (71.03711378471) modn_peptide</option>
        <option value="114">Phosphorylation of Y (79.96633052074999) modaa</option>
        <option value="115">Didehydro of T (-2.01565006414) modaa</option>
        <option value="116">Oxidation of K (15.99491461956) modaa</option>
        <!--<option value="117">Oxidation of M (15.99491461956) modaa</option>-->
        <option value="118">Phosphorylation of T (79.96633052074999) modaa</option>
        <option value="119">Oxidation of P (15.99491461956) modaa</option>
        <option value="120">Trioxidation of C (47.98474385868) modaa</option>
        <option value="121">Dimethylation of K 2H(6) (34.068960602660006) modaa</option>
        <option value="122">NIPCAM of C (99.06841391299) modaa</option>
        <option value="123">Methylthio of N (45.987721064140004) modaa</option>
        <option value="124">Trideuterated Methyl Ester of K (17.034480301330003) modaa</option>
        <option value="125">Heme B of C (616.17729182368) modaa</option>
        <option value="126">Trideuterated Methyl Ester of E (17.034480301330003) modaa</option>
        <option value="127">Methylthio of C (45.987721064140004) modaa</option>
        <option value="128">Phosphorylation of S (79.96633052074999) modaa</option>
        <option value="129">Methylthio of D (45.987721064140004) modaa</option>
        <option value="130">Heme B of H (616.17729182368) modaa</option>
        <option value="131">Trideuterated Methyl Ester of D (17.034480301330003) modaa</option>
        <option value="132">ICPL10 of K (115.06669973029) modaa</option>
        <option value="133">Deamidation of N 18O (2.9882619631300003) modaa</option>
        <option value="134">Dimethylation of peptide N-term 2H(6) (34.068960602660006) modn_peptide</option>
        <option value="135">Pyridylethyl of C (105.05784922929) modaa</option>
        <option value="136">Arginine 13C(6) 15N(4) (10.008268600400015) modaa</option>
        <option value="137">Trideuterated Methyl Ester of peptide C-term (17.034480301330003) modn_peptide</option>
        <option value="138">Hex(1)NAc(1) of S (365.13219593801) modaa</option>
        <option value="139">TMT 6-plex of K+8 (237.17713094832) modaa</option>
        <option value="140">Hex(1)NAc(1) of T (365.13219593801) modaa</option>
        <option value="141">TMT 6-plex of K+6 (235.18306116152) modaa</option>
        <option value="142">Propionyl of K heavy (59.03627926124) modaa</option>
        <option value="143">Citrullination of R (0.9840155826899988) modaa</option>
        <option value="144">TMT 6-plex of K+4 (233.18803911764) modaa</option>
        <option value="145">mTRAQ of peptide N-term 13C(3) 15N (144.1020624208) modn_peptide</option>
        <option value="146">ICPL0 of peptide N-term (105.02146372057) modn_peptide</option>
        <option value="147">Geranyl-geranyl of C (272.25040102624) modaa</option>
        <option value="148">Lysine 13C(6) 15N(2) (8.014198813600004) modaa</option>
        <option value="149">Homoserine lactone of peptide C-term M (-48.00337112828) modcaa_peptide</option>
        <option value="150">Carbamidomethylation of E (57.02146372057) modaa</option>
        <option value="151">Dimethylation of K 2H(4) (32.0564071112) modaa</option>
        <option value="152">Glutathione of C (305.06815621281) modaa</option>
        <option value="153">Carbamidomethylation of K (57.02146372057) modaa</option>
        <option value="154">iodoTMT zero of C (324.21614077584) modaa</option>
        <option value="155">Lipoyl of K (188.0329570044) modaa</option>
        <option value="156">Leucine 13C(6) 15N(1) (7.017163920200005) modaa</option>
        <option value="157">iTRAQ 4-plex of peptide N-term (144.1020624208) modn_peptide</option>
        <option value="158">Deamidation of Q (0.9840155826899988) modaa</option>
        <option value="159">Deamidation of N (0.9840155826899988) modaa</option>
    </xml>
</macros>