Mercurial > repos > galaxyp > peptide_to_gff

annotate test-data/ProtDataBlat.gff3 @ 3:42c89c1bbda9 default tip

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Update output labels
author Jim Johnson <jj@umn.edu>
date Mon, 15 Jun 2015 15:44:54 -0500
parents cec60c540546
children
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galaxyp
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1 ##gff-version 3
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galaxyp
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2 ##sequence-region 19 1 287484
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galaxyp
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3 19 MassSpec peptide 282299 287484 10.0 - 0 ID=TEARLSFYSGHSSFGMYCMVFLALYVQ
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galaxyp
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4 19 MassSpec CDS 287474 287484 . - 0 Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
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galaxyp
parents:
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5 19 MassSpec CDS 282752 282809 . - 1 Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
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galaxyp
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6 19 MassSpec CDS 282299 282310 . - 0 Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
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galaxyp
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7 ##sequence-region 19 1 288055
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galaxyp
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8 19 MassSpec peptide 287707 288055 10.0 - 0 ID=MAGVTITATVILVSAGEAYLVYTDRLY
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galaxyp
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9 19 MassSpec CDS 288020 288055 . - 0 Parent=MAGVTITATVILVSAGEAYLVYTDRLY;transcript_id=ENST00000269812
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galaxyp
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10 19 MassSpec CDS 287707 287751 . - 0 Parent=MAGVTITATVILVSAGEAYLVYTDRLY;transcript_id=ENST00000269812
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galaxyp
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11 ##sequence-region 19 1 288160
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galaxyp
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12 19 MassSpec peptide 288113 288160 10.0 - 0 ID=FAILTLVNAPYKRGFY
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galaxyp
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13 19 MassSpec CDS 288113 288160 . - 0 Parent=FAILTLVNAPYKRGFY;transcript_id=ENST00000269812
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galaxyp
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14 ##sequence-region 19 1 497915
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galaxyp
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15 19 MassSpec peptide 497862 497915 10.0 + 0 ID=VEPPEPVVAVALGASRQL
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galaxyp
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16 19 MassSpec CDS 497862 497915 . + 0 Parent=VEPPEPVVAVALGASRQL;transcript_id=ENST00000215637
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galaxyp
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17 ##sequence-region 19 1 498530
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galaxyp
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18 19 MassSpec peptide 498093 498530 10.0 + 0 ID=HTVQLLVYAFPDQLTVSPAA
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galaxyp
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19 19 MassSpec CDS 498093 498117 . + 0 Parent=HTVQLLVYAFPDQLTVSPAA;transcript_id=ENST00000215637
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galaxyp
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20 19 MassSpec CDS 498496 498530 . + 2 Parent=HTVQLLVYAFPDQLTVSPAA;transcript_id=ENST00000215637
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galaxyp
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21 ##sequence-region 19 1 504758
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galaxyp
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22 19 MassSpec peptide 498813 504758 10.0 + 0 ID=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA
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galaxyp
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23 19 MassSpec CDS 498813 498825 . + 0 Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637
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galaxyp
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24 19 MassSpec CDS 501669 501929 . + 2 Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637
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galaxyp
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25 19 MassSpec CDS 504745 504758 . + 2 Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637