Mercurial > repos > galaxyp > peptide_to_gff
comparison peptide_to_gff.xml @ 1:0cd177bc347d
Update tool dependencies
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 08 Sep 2014 13:36:17 -0500 |
| parents | cec60c540546 |
| children | 4c87b4cc1176 |
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| 0:cec60c540546 | 1:0cd177bc347d |
|---|---|
| 1 <tool id="peptide_to_gff" name="Peptide to GFF" version="1.0"> | 1 <tool id="peptide_to_gff" name="Peptide to GFF" version="1.0"> |
| 2 <description>Map peptide to reference genome</description> | 2 <description>Map peptide to reference genome</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package">kent_tools</requirement> | 4 <requirement type="package" version="35x1">blat</requirement> |
| 5 <requirement type="package" version="master">peptide_to_gff</requirement> | 5 <requirement type="package" version="1.61">biopython</requirement> |
| 6 <requirement type="package" version="0.1">bcbb_gff</requirement> | |
| 7 <requirement type="package" version="0.1">peptide_to_gff</requirement> | |
| 6 </requirements> | 8 </requirements> |
| 7 <command>peptide_to_gff | 9 <command>peptide_to_gff |
| 8 #if $peptide_src.inputFormat == 'protein_pilot' or $peptide_src.inputFormat == 'tabular': | 10 #if $peptide_src.inputFormat == 'protein_pilot' or $peptide_src.inputFormat == 'tabular': |
| 9 --skip_lines $peptide_src.input_file.metadata.comment_lines | 11 --skip_lines $peptide_src.input_file.metadata.comment_lines |
| 10 --input $peptide_src.input_file | 12 --input $peptide_src.input_file |