Mercurial > repos > galaxyp > peptide_to_gff

diff test-data/ProtData.gff3 @ 0:cec60c540546

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author galaxyp
date Wed, 26 Jun 2013 15:56:16 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ProtData.gff3	Wed Jun 26 15:56:16 2013 -0400
@@ -0,0 +1,25 @@
+##gff-version 3
+##sequence-region 19 1 287484
+19	MassSpec	peptide	282299	287484	10.0	-	0	ID=TEARLSFYSGHSSFGMYCMVFLALYVQ
+19	MassSpec	CDS	287474	287484	.	-	0	Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
+19	MassSpec	CDS	282752	282809	.	-	1	Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
+19	MassSpec	CDS	282299	282310	.	-	0	Parent=TEARLSFYSGHSSFGMYCMVFLALYVQ;transcript_id=ENST00000269812
+##sequence-region 19 1 288055
+19	MassSpec	peptide	287707	288055	10.0	-	0	ID=MAGVTITATVILVSAGEAYLVYTDRLY
+19	MassSpec	CDS	288020	288055	.	-	0	Parent=MAGVTITATVILVSAGEAYLVYTDRLY;transcript_id=ENST00000269812
+19	MassSpec	CDS	287707	287751	.	-	0	Parent=MAGVTITATVILVSAGEAYLVYTDRLY;transcript_id=ENST00000269812
+##sequence-region 19 1 288160
+19	MassSpec	peptide	288113	288160	10.0	-	0	ID=FAILTLVNAPYKRGFY
+19	MassSpec	CDS	288113	288160	.	-	0	Parent=FAILTLVNAPYKRGFY;transcript_id=ENST00000269812
+##sequence-region 19 1 497915
+19	MassSpec	peptide	497862	497915	10.0	+	0	ID=VEPPEPVVAVALGASRQL
+19	MassSpec	CDS	497862	497915	.	+	0	Parent=VEPPEPVVAVALGASRQL;transcript_id=ENST00000215637
+##sequence-region 19 1 498530
+19	MassSpec	peptide	498093	498530	10.0	+	0	ID=HTVQLLVYAFPDQLTVSPAA
+19	MassSpec	CDS	498093	498117	.	+	0	Parent=HTVQLLVYAFPDQLTVSPAA;transcript_id=ENST00000215637
+19	MassSpec	CDS	498496	498530	.	+	2	Parent=HTVQLLVYAFPDQLTVSPAA;transcript_id=ENST00000215637
+##sequence-region 19 1 504758
+19	MassSpec	peptide	498813	504758	10.0	+	0	ID=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA
+19	MassSpec	CDS	498813	498825	.	+	0	Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637
+19	MassSpec	CDS	501669	501929	.	+	2	Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637
+19	MassSpec	CDS	504745	504758	.	+	2	Parent=QAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSSKPA;transcript_id=ENST00000215637