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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="SearchGUI" version="1.13.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip</action>
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7 <action type="shell_command">tar -xf SearchGUI-1.13.1_mac_and_linux.tar</action>
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8 <action type="shell_command">cd SearchGUI-1.13.1_mac_and_linux</action>
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9 <action type="shell_command">chmod -R o+w resources</action>
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10 <action type="move_directory_files">
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11 <source_directory>.</source_directory>
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12 <destination_directory>$INSTALL_DIR/</destination_directory>
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13 </action>
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14 <action type="shell_command">mkdir -p $BIN_DIR</action>
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15 <action type="set_environment">
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool.
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22 (https://github.com/jmchilton/peptide-shaker).
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23
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24 </readme>
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25 </package>
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26
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27 <package name="PeptideShaker" version="0.20.1">
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28 <install version="1.0">
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29 <actions>
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30 <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action>
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31 <action type="shell_command">chmod -R o+w resources</action>
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32 <action type="move_directory_files">
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33 <source_directory>.</source_directory>
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34 <destination_directory>$INSTALL_DIR/</destination_directory>
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35 </action>
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36 <action type="shell_command">mkdir -p $BIN_DIR</action>
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37 <action type="set_environment">
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38 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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39 </action>
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40 </actions>
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41 </install>
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42 <readme>
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43 This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework.
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44 (https://github.com/jmchilton/peptide-shaker).
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45
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46 </readme>
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47 </package>
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48 </tool_dependency>
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