Mercurial > repos > galaxyp > peptideshaker

annotate test-data/peptideshaker_reports_output_hierarchical.tabular @ 59:943a34df6047 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 1cb321cbce2a6528764abc9c9431687f56c57588"
author galaxyp
date Fri, 21 May 2021 19:13:14 +0000
parents bb0130ff73ce
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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55
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
1 Protein Inference Main Accession Description Protein Group Secondary Accessions Validated Coverage [%] Possible Coverage [%] #Peptides #Validated Peptides #Unique Peptides #PSMs #Validated PSMs Confidently Localized Modification Sites #Confidently Localized Modification Sites Ambiguously Localized Modification Sites #Ambiguously Localized Modification Sites Spectrum Counting NSAF MW [kDa] Confidence [%] Validation Decoy
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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2 1 Single Protein cds.comp8310_c0_seq2 m.1138 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 22.01 EValue:2.0e-16 cds.comp8310_c0_seq2 3.69 81.0 1 1 1 1 1 0.003257328990228013 45.26545451338222 100.0 Doubtful 0
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
3 Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #PSMs #Validated PSMs Confidence [%] Decoy Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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4 1.1 cds.comp8310_c0_seq2 NLVAEESMNMLKNK NR FK 1 1 100.0 0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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5 Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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6 1.1.1 cds.comp8310_c0_seq2 NLVAEESMNMLKNK NH2-NLVAEESMNMLKNK-COOH searchgui_smallspectra small.17.17. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=17" 8.9853 811.408081054688 2+, 3+, 4+ 2 1619.80111309327 1 -1.7626881884550694 0 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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7 2 Single Protein cds.comp41890_c0_seq1 m.9546 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 38.58 EValue:4.0e-20 cds.comp41890_c0_seq1 20.15 91.04 1 1 1 1 1 0.00819672131147541 14.802380493830709 100.0 Doubtful 0
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
8 Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #PSMs #Validated PSMs Confidence [%] Decoy Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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9 2.1 cds.comp41890_c0_seq1 PGGFAKVWANGMGDPNSGDLVWHNKSR LK LG 1 1 100.0 0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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10 Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
11 2.1.1 cds.comp41890_c0_seq1 PGGFAKVWANGMGDPNSGDLVWHNKSR NH2-PGGFAKVWANGMGDPNSGDLVWHNKSR-COOH searchgui_smallspectra small.28.28. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=28" 16.3598 725.3583984375 2+, 3+, 4+ 4 2896.38272917215 1 6.345261931182815 0 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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12 3 Related Proteins cds.comp41779_c0_seq1 m.9429 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 30.62 EValue:7.0e-67 cds.comp41779_c0_seq1,cds.comp41779_c0_seq2,cds.comp41779_c0_seq3 cds.comp41779_c0_seq2,cds.comp41779_c0_seq3 3.34 78.82 1 1 1 1 1 0.00202020202020202 69.88215380565931 100.0 Doubtful 0
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
13 Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #PSMs #Validated PSMs Confidence [%] Decoy Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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14 3.1 cds.comp41779_c0_seq1,cds.comp41779_c0_seq2,cds.comp41779_c0_seq3 LDRLISATSISPEHKIDFLFK WK;WK;WK DP;DP;DP 1 1 100.0 0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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15 Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
16 3.1.1 cds.comp41779_c0_seq1,cds.comp41779_c0_seq2,cds.comp41779_c0_seq3 LDRLISATSISPEHKIDFLFK NH2-LDRLISATSISPEHKIDFLFK-COOH searchgui_smallspectra small.3.3. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=3" 0.6731 810.789428710938 2+, 3+, 4+ 3 2429.33184573292 0 6.00693871414815 0 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
17 4 Single Protein cds.comp41890_c0_seq1_REVERSED m.9546 RecName: Full=70 kDa neurofilament protein; 1051067 GO:0005882 GO:0005198 Identity: 38.58 EValue:4.0e-20-REVERSED cds.comp41890_c0_seq1_REVERSED 8.21 90.3 1 1 1 1 1 0.008264462809917356 14.802380493830709 100.0 Doubtful 0
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
18 Protein(s) Sequence AAs Before AAs After Variable Modifications Fixed Modifications Localization Confidence #PSMs #Validated PSMs Confidence [%] Decoy Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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19 4.1 cds.comp41890_c0_seq1_REVERSED RYTSHEQLEGK NK VL 1 1 100.0 0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
20 Protein(s) Sequence Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Decoy Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
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21 4.1.1 cds.comp41890_c0_seq1_REVERSED RYTSHEQLEGK NH2-RYTSHEQLEGK-COOH searchgui_smallspectra small.46.46. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=46" 27.6339 674.841369628906 2+, 3+, 4+ 2 1346.6578773639 1 5.1562724435666505 0 100.0 Confident