annotate searchgui_mods.loc.sample @ 22:e3be595c0bf5 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 5ca27ef280bee8b65fd3d0d2cd5ff280a2cebb3d
author iracooke
date Fri, 07 Aug 2015 06:55:04 -0400
parents 0578e296cab4
children 815f93bb3e1b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
1 methylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
2 oxidation of m
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
3 carboxymethyl c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
4 carbamidomethyl c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
5 deamidation of n and q
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
6 propionamide c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
7 phosphorylation of s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
8 phosphorylation of t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
9 phosphorylation of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
10 m cleavage from protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
11 acetylation of protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
12 methylation of protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
13 tri-methylation of protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
14 beta methythiolation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
15 methylation of q
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
16 tri-methylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
17 methylation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
18 methylation of e
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
19 methylation of peptide c-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
20 tri-deuteromethylation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
21 tri-deuteromethylation of e
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
22 tri-deuteromethylation of peptide c-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
23 n-formyl met addition
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
24 2-amino-3-oxo-butanoic acid t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
25 acetylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
26 amidation of peptide c-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
27 beta-methylthiolation of d (duplicate of 13)
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
28 carboxyamidomethylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
29 carboxyamidomethylation of h
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
30 carboxyamidomethylation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
31 carboxyamidomethylation of e
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
32 carbamylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
33 carbamylation of n-term peptide
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
34 citrullination of r
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
35 oxidation of c to cysteic acid
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
36 di-iodination of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
37 di-methylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
38 di-methylation of r
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
39 di-methylation of peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
40 oxidation of f to dihydroxyphenylalanine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
41 gammathiopropionylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
42 gammathiopropionylation of peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
43 farnesylation of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
44 formylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
45 formylation of peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
46 oxidation of w to formylkynurenin
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
47 fluorophenylalanine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
48 beta-carboxylation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
49 gamma-carboxylation of e
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
50 geranyl-geranyl
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
51 glucuronylation of protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
52 glutathione disulfide
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
53 ubiquitinylation residue
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
54 guanidination of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
55 oxidation of h to n
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
56 oxidation of h to d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
57 homoserine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
58 homoserine lactone
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
59 oxidation of w to hydroxykynurenin
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
60 hydroxylation of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
61 hydroxylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
62 hydroxylation of n
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
63 hydroxylation of p
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
64 hydroxylation of f
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
65 hydroxylation of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
66 iodination of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
67 oxidation of w to kynurenin
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
68 lipoyl k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
69 methyl ester of peptide c-term (duplicate of 18)
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
70 methyl ester of d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
71 methyl ester of e (duplicate of 17)
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
72 methyl ester of s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
73 methyl ester of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
74 methyl c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
75 methyl h
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
76 methyl n
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
77 methylation of peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
78 methyl r
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
79 myristoleylation of g
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
80 myristoyl-4h of g
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
81 myristoylation of peptide n-term g
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
82 myristoylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
83 formylation of protein n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
84 nem c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
85 nipcam
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
86 oxidation of w to nitro
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
87 oxidation of y to nitro
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
88 o18 on peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
89 di-o18 on peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
90 oxidation of h
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
91 oxidation of w
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
92 phosphopantetheine s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
93 palmitoylation of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
94 palmitoylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
95 palmitoylation of s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
96 palmitoylation of t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
97 phosphorylation of s with prompt loss
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
98 phosphorylation of t with prompt loss
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
99 phosphorylation with prompt loss on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
100 phosphorylation with neutral loss on c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
101 phosphorylation with neutral loss on d
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
102 phosphorylation with neutral loss on h
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
103 propionyl light k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
104 propionyl light on peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
105 propionyl heavy k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
106 propionyl heavy peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
107 pyridyl k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
108 pyridyl peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
109 pyro-cmc
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
110 pyro-glu from n-term e
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
111 pyro-glu from n-term q
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
112 oxidation of p to pyroglutamic acid
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
113 s-pyridylethylation of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
114 semet
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
115 sulfation of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
116 sulphone of m
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
117 tri-iodination of y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
118 tri-methylation of r
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
119 n-acyl diglyceride cysteine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
120 icat light
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
121 icat heavy
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
122 camthiopropanoyl k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
123 phosphorylation with neutral loss on s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
124 phosphorylation with neutral loss on t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
125 phosphorylation of s with etd loss
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
126 phosphorylation of t with etd loss
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
127 heavy arginine-13c6
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
128 heavy arginine-13c6-15n4
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
129 heavy lysine-13c6
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
130 pngasf in o18 water
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
131 beta elimination of s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
132 beta elimination of t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
133 oxidation of c to sulfinic acid
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
134 arginine to ornithine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
135 dehydro of s and t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
136 carboxykynurenin of w
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
137 sumoylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
138 itraq114 on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
139 itraq114 on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
140 itraq114 on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
141 itraq115 on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
142 itraq115 on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
143 itraq115 on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
144 itraq116 on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
145 itraq116 on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
146 itraq116 on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
147 itraq117 on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
148 itraq117 on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
149 itraq117 on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
150 mmts on c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
151 heavy lysine - 2h4
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
152 heavy lysine - 13c6 15n2
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
153 asparagine hexnac
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
154 asparagine dhexhexnac
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
155 serine hexnac
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
156 threonine hexnac
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
157 palmitoleyl of s
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
158 palmitoleyl of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
159 palmitoleyl of t
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
160 chd2-di-methylation of k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
161 chd2-di-methylation of peptide n-term
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
162 maleimide-peo2-biotin of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
163 phosphorylation of h
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
164 oxidation of c
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
165 oxidation of y (duplicate of 64)
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
166 uniblue a on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
167 deamidation of n
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
168 trideuteration of l (silac)
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
169 tmt duplex on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
170 tmt duplex on n-term peptide
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
171 tmt 6-plex on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
172 tmt 6-plex on n-term peptide
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
173 itraq8plex:13c(7)15n(1) on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
174 itraq8plex:13c(7)15n(1) on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
175 itraq8plex:13c(7)15n(1) on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
176 itraq8plex:13c(6)15n(2) on nterm
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
177 itraq8plex:13c(6)15n(2) on k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
178 itraq8plex:13c(6)15n(2) on y
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
179 selenocysteine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
180 carboxymethylated selenocysteine
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
181 dimethyl 2d n-terminus
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
182 dimethyl 2d k
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
183 gtp desthiobiotinc12
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
184 gtp desthiobiotinc13
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
185 user modification 5
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
186 user modification 6
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
187 user modification 7
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
188 user modification 8
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
189 user modification 9
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
190 user modification 10
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
191 user modification 11
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
192 user modification 12
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
193 user modification 13
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
194 user modification 14
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
195 user modification 15
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
196 user modification 16
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
197 user modification 17
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
198 user modification 18
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
199 user modification 19
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
200 user modification 20
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
201 user modification 21
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
202 user modification 22
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
203 user modification 23
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
204 user modification 24
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
205 user modification 25
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
206 user modification 26
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
207 user modification 27
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
208 user modification 28
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
209 user modification 29
0578e296cab4 Initial commit.
galaxyp
parents:
diff changeset
210 user modification 30