Mercurial > repos > galaxyp > peptideshaker

annotate test-data/peptideshaker_reports_output_psm.tabular @ 61:3ec27b4cee7c draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit fc2810c412d9954fa584ae74497562b986c52764"
author galaxyp
date Thu, 12 Aug 2021 14:06:52 +0000
parents bb0130ff73ce
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
1 Protein(s) Sequence AAs Before AAs After Position Modified Sequence Variable Modifications Fixed Modifications Spectrum File Spectrum Title Spectrum Scan Number RT m/z Measured Charge Identification Charge Theoretical Mass Isotope Number Precursor m/z Error [ppm] Localization Confidence Probabilistic PTM score D-score Confidence [%] Validation
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
2 1 cds.comp41779_c0_seq1,cds.comp41779_c0_seq2,cds.comp41779_c0_seq3 LDRLISATSISPEHKIDFLFK WK;WK;WK DP;DP;DP 545;538;63 NH2-LDRLISATSISPEHKIDFLFK-COOH searchgui_smallspectra small.3.3. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=3" 0.6731 810.789428710938 2+, 3+, 4+ 3 2429.33184573292 0 6.00693871414815 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
3 2 cds.comp8310_c0_seq2 NLVAEESMNMLKNK NR FK 263 NH2-NLVAEESMNMLKNK-COOH searchgui_smallspectra small.17.17. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=17" 8.9853 811.408081054688 2+, 3+, 4+ 2 1619.80111309327 1 -1.7626881884550694 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
4 3 cds.comp41890_c0_seq1 PGGFAKVWANGMGDPNSGDLVWHNKSR LK LG 77 NH2-PGGFAKVWANGMGDPNSGDLVWHNKSR-COOH searchgui_smallspectra small.28.28. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=28" 16.3598 725.3583984375 2+, 3+, 4+ 4 2896.38272917215 1 6.345261931182815 100.0 Confident
bb0130ff73ce "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
galaxyp
parents:
diff changeset
5 4 cds.comp41890_c0_seq1_REVERSED RYTSHEQLEGK NK VL 114 NH2-RYTSHEQLEGK-COOH searchgui_smallspectra small.46.46. File:"small.RAW", NativeID:"controllerType=0 controllerNumber=1 scan=46" 27.6339 674.841369628906 2+, 3+, 4+ 2 1346.6578773639 1 5.1562724435666505 100.0 Confident