Mercurial > repos > galaxyp > peptideshaker
comparison build_mods_loc.py @ 0:0578e296cab4 draft
Initial commit.
| author | galaxyp |
|---|---|
| date | Fri, 10 May 2013 17:58:22 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:0578e296cab4 |
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| 1 #!/usr/bin/env python | |
| 2 | |
| 3 import xml.etree.ElementTree as ET | |
| 4 from os.path import exists | |
| 5 | |
| 6 with open("searchgui_mods.loc", "w") as output: | |
| 7 for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: | |
| 8 tree = ET.parse(mods_path) | |
| 9 modifications_el = tree.getroot() | |
| 10 for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): | |
| 11 name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") | |
| 12 output.write("%s\n" % name_el.text.lower()) |