Mercurial > repos > galaxyp > peptideshaker
comparison admin_scripts/species @ 20:2cafc729b2ae draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 0e976aeeed9d516e0ad4735dc847b1f2eba3532b
| author | iracooke |
|---|---|
| date | Sun, 31 May 2015 09:05:57 -0400 |
| parents | |
| children |
comparison
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| 19:7e61179c5952 | 20:2cafc729b2ae |
|---|---|
| 1 >Fungi | |
| 2 Ashbya gossypii agossypii_eg_gene | |
| 3 Aspergillus clavatus aclavatus_eg_gene | |
| 4 Aspergillus flavus aflavus_eg_gene | |
| 5 Aspergillus fumigatus afumigatus_eg_gene | |
| 6 Aspergillus fumigatusa1163 afumigatusa1163_eg_gene | |
| 7 Aspergillus nidulans anidulans_eg_gene | |
| 8 Aspergillus niger aniger_eg_gene | |
| 9 Aspergillus oryzae aoryzae_eg_gene | |
| 10 Aspergillus terreus aterreus_eg_gene | |
| 11 Blumeria graminis bgraminis_eg_gene | |
| 12 Botrytis cinerea bcinerea_eg_gene | |
| 13 Colletotrichum gloeosporioides cgloeosporioides_eg_gene | |
| 14 Colletotrichum higginsianum chigginsianum_eg_gene | |
| 15 Colletotrichum orbiculare corbiculare_eg_gene | |
| 16 Cryptococcus neoformans cneoformans_eg_gene | |
| 17 Dothistroma septosporum dseptosporum_eg_gene | |
| 18 Fusarium fujikuroi ffujikuroi_eg_gene | |
| 19 Fusarium graminearum fgraminearum_eg_gene | |
| 20 Fusarium oxysporum foxysporum_eg_gene | |
| 21 Fusarium pseudograminearum fpseudograminearum_eg_gene | |
| 22 Fusarium solani fsolani_eg_gene | |
| 23 Fusarium verticillioides fverticillioides_eg_gene | |
| 24 Gaeumannomyces graminis ggraminis_eg_gene | |
| 25 Colletotrichum graminicola cgraminicola_eg_gene | |
| 26 Komagataella pastoris kpastoris_eg_gene | |
| 27 Leptosphaeria maculans lmaculans_eg_gene | |
| 28 Magnaporthe oryzae moryzae_eg_gene | |
| 29 Magnaporthe poae mpoae_eg_gene | |
| 30 Melampsora larici-populina mlaricipopulina_eg_gene | |
| 31 Neosartorya fischeri nfischeri_eg_gene | |
| 32 Neurospora crassa ncrassa_eg_gene | |
| 33 Phaeosphaeria nodorum pnodorum_eg_gene | |
| 34 Puccinia graminis pgraminis_eg_gene | |
| 35 Puccinia graminis Ug99 pgraminisug99_eg_gene | |
| 36 Puccinia triticina ptriticina_eg_gene | |
| 37 Pyrenophora teres pteres_eg_gene | |
| 38 Pyrenophora tritici-repentis ptriticirepentis_eg_gene | |
| 39 Saccharomyces cerevisiae scerevisiae_eg_gene | |
| 40 Schizosaccharomyces cryophilus scryophilus_eg_gene | |
| 41 Schizosaccharomyces japonicus japonicus_eg_gene | |
| 42 Schizosaccharomyces octosporus octosporus_eg_gene | |
| 43 Schizosaccharomyces pombe spombe_eg_gene | |
| 44 Sclerotinia sclerotiorum ssclerotiorum_eg_gene | |
| 45 Sporisorium reilianum sreilianum_eg_gene | |
| 46 Trichoderma reesei treesei_eg_gene | |
| 47 Trichoderma virens tvirens_eg_gene | |
| 48 Tuber melanosporum tmelanosporum_eg_gene | |
| 49 Ustilago maydis umaydis_eg_gene | |
| 50 Verticillium dahliae JR2 vdahliaejr2_eg_gene | |
| 51 Verticillium dahliae dahliae_eg_gene | |
| 52 Yarrowia lipolytica ylipolytica_eg_gene | |
| 53 Zymoseptoria tritici ztritici_eg_gene | |
| 54 | |
| 55 >Metazoa | |
| 56 Acyrthosiphon pisum apisum_eg_gene | |
| 57 Aedes aegypti (Yellow fever mosquito) aaegypti_eg_gene | |
| 58 Amphimedon queenslandica aqueenslandica_eg_gene | |
| 59 Anopheles darlingi adarlingi_eg_gene | |
| 60 Anopheles gambiae (African malaria mosquito) agambiae_eg_gene | |
| 61 Apis mellifera amellifera_eg_gene | |
| 62 Atta cephalotes acephalotes_eg_gene | |
| 63 Bombyx mori bmori_eg_gene | |
| 64 Brugia malayi bmalayi_eg_gene | |
| 65 Caenorhabditis brenneri cbrenneri_eg_gene | |
| 66 Caenorhabditis briggsae cbriggsae_eg_gene | |
| 67 Caenorhabditis elegans celegans_eg_gene | |
| 68 Caenorhabditis japonica cjaponica_eg_gene | |
| 69 Caenorhabditis remanei cremanei_eg_gene | |
| 70 Culex quinquefasciatus (Southern house mosquito) cquinquefasciatus_eg_gene | |
| 71 Danaus plexippus dplexippus_eg_gene | |
| 72 Daphnia pulex dpulex_eg_gene | |
| 73 Dendroctonus ponderosae ponderosae_eg_gene | |
| 74 Drosophila ananassae dananassae_eg_gene | |
| 75 Drosophila erecta derecta_eg_gene | |
| 76 Drosophila grimshawi dgrimshawi_eg_gene | |
| 77 Drosophila melanogaster (Fruit fly) dmelanogaster_eg_gene | |
| 78 Drosophila mojavensis dmojavensis_eg_gene | |
| 79 Drosophila persimilis dpersimilis_eg_gene | |
| 80 Drosophila pseudoobscura dpseudoobscura_eg_gene | |
| 81 Drosophila sechellia dsechellia_eg_gene | |
| 82 Drosophila simulans dsimulans_eg_gene | |
| 83 Drosophila virilis dvirilis_eg_gene | |
| 84 Drosophila willistoni dwillistoni_eg_gene | |
| 85 Drosophila yakuba dyakuba_eg_gene | |
| 86 Heliconius melpomene hmelpomene_eg_gene | |
| 87 Helobdella robusta robusta_eg_gene | |
| 88 Ixodes scapularis (Black-legged tick) iscapularis_eg_gene | |
| 89 Loa loa lloa_eg_gene | |
| 90 Lottia gigantea lgigantea_eg_gene | |
| 91 Megaselia scalaris mscalaris_eg_gene | |
| 92 Melitaea cinxia mcinxia_eg_gene | |
| 93 Mnemiopsis leidyi mleidyi_eg_gene | |
| 94 Nasonia vitripennis nvitripennis_eg_gene | |
| 95 Nematostella vectensis nvectensis_eg_gene | |
| 96 Onchocerca volvulus ovolvulus_eg_gene | |
| 97 Pediculus humanus (Human louse) phumanus_eg_gene | |
| 98 Pristionchus pacificus ppacificus_eg_gene | |
| 99 Rhodnius prolixus rprolixus_eg_gene | |
| 100 Schistosoma mansoni smansoni_eg_gene | |
| 101 Solenopsis invicta (Red fire ant) sinvicta_eg_gene | |
| 102 Strigamia maritima smaritima_eg_gene | |
| 103 Strongylocentrotus purpuratus spurpuratus_eg_gene | |
| 104 Tetranychus urticae turticae_eg_gene | |
| 105 Tribolium castaneum (red flour beetle) tcastaneum_eg_gene | |
| 106 Trichinella spiralis tspiralis_eg_gene | |
| 107 Trichoplax adhaerens tadhaerens_eg_gene | |
| 108 Zootermopsis nevadensis znevadensis_eg_gene | |
| 109 | |
| 110 >Plants | |
| 111 Amborella (Amborella trichopoda) atrichopoda_eg_gene | |
| 112 Arabidopsis lyrata (Lyrate rockcress) alyrata_eg_gene | |
| 113 Arabidopsis thaliana (Thale-cress) athaliana_eg_gene | |
| 114 Brachypodium distachyon (False brome) bdistachyon_eg_gene | |
| 115 Brassica oleracea boleracea_eg_gene | |
| 116 Brassica rapa genes (Field mustard) brapa_eg_gene | |
| 117 Chlamydomonas reinhardtii (Green algae) creinhardtii_eg_gene | |
| 118 Cyanidioschyzon merolae (Red algae) cmerolae_eg_gene | |
| 119 Glycine max (Soybean) gmax_eg_gene | |
| 120 Hordeum vulgare (Barley) hvulgare_eg_gene | |
| 121 Leersia perrieri (Leersia) lperrieri_eg_gene | |
| 122 Medicago truncatula (Barrel medic) mtruncatula_eg_gene | |
| 123 Musa acuminata (Banana) macuminata_eg_gene | |
| 124 Oryza brachyantha obrachyantha_eg_gene | |
| 125 Oryza glumaepatula oglumaepatula_eg_gene | |
| 126 Oryza meridionalis omeridionalis_eg_gene | |
| 127 Oryza nivara onivara_eg_gene | |
| 128 Oryza punctata opunctata_eg_gene | |
| 129 Oryza rufipogon (Common wild rice) orufipogon_eg_gene | |
| 130 Oryza sativa (Indica rice) osativa_eg_gene | |
| 131 Oryza sativa Indica Group oindica_eg_gene | |
| 132 Oryza sativa Japonica (Japonica rice) osativa_eg_gene | |
| 133 Ostreococcus lucimarinus (Green algae) olucimarinus_eg_gene | |
| 134 Physcomitrella patens ppatens_eg_gene | |
| 135 Physcomitrella patens (Moss) ppatens_eg_gene | |
| 136 Populus trichocarpa ptrichocarpa_eg_gene | |
| 137 Populus trichocarpa (Western balsam poplar) ptrichocarpa_eg_gene | |
| 138 Prunus persica (Peach) ppersica_eg_gene | |
| 139 Selaginella moellendorffii (Spike moss) smoellendorffii_eg_gene | |
| 140 Setaria italica (Foxtail millet) sitalica_eg_gene | |
| 141 Solanum lycopersicum (Tomato) slycopersicum_eg_gene | |
| 142 Solanum tuberosum (Potato) stuberosum_eg_gene | |
| 143 Sorghum bicolor (Sorghum) sbicolor_eg_gene | |
| 144 Theobroma cacao (Cocoa) tcacao_eg_gene | |
| 145 Triticum aestivum (Bread wheat) taestivum_eg_gene | |
| 146 Triticum urartu (Einkorn) turartu_eg_gene | |
| 147 Vitis vinifera (Wine grape) vvinifera_eg_gene | |
| 148 Zea mays (Maize) zmays_eg_gene | |
| 149 | |
| 150 >Protists | |
| 151 Albugo laibachii alaibachii_eg_gene | |
| 152 Bigelowiella natans bnatans_eg_gene | |
| 153 Dictyostelium discoideum ddiscoideum_eg_gene | |
| 154 Emiliania huxleyi ehuxleyi_eg_gene | |
| 155 Entamoeba histolytica ehistolytica_eg_gene | |
| 156 Giardia lamblia glamblia_eg_gene | |
| 157 Guillardia theta CCMP2712 gtheta_eg_gene | |
| 158 Hyaloperonospora arabidopsidis harabidopsidis_eg_gene | |
| 159 Leishmania major lmajor_eg_gene | |
| 160 Paramecium tetraurelia ptetraurelia_eg_gene | |
| 161 Phaeodactylum tricornutum ptricornutum_eg_gene | |
| 162 Phytophthora infestans pinfestans_eg_gene | |
| 163 Phytophthora kernoviae pkernoviae_eg_gene | |
| 164 Phytophthora lateralis plateralis_eg_ge | |
| 165 Phytophthora parasitica pparasitica_eg_gene | |
| 166 Phytophthora ramorum pramorum_eg_gene | |
| 167 Phytophthora sojae psojae_eg_gene | |
| 168 Plasmodium berghei pberghei_eg_gene | |
| 169 Plasmodium chabaudi pchabaudi_eg_gene | |
| 170 Plasmodium falciparum pfalciparum_eg_gene | |
| 171 Plasmodium knowlesi pknowlesi_eg_gene | |
| 172 Plasmodium vivax pvivax_eg_gene | |
| 173 Pythium aphanidermatum paphanidermatum_eg_gene | |
| 174 Pythium arrhenomanes parrhenomanes_eg_gene | |
| 175 Pythium irregulare pirregulare_eg_gene | |
| 176 Pythium iwayamai piwayamai_eg_gene | |
| 177 Pythium ultimum pultimum_eg_gene | |
| 178 Pythium vexans pvexans_eg_gene | |
| 179 Tetrahymena thermophila tthermophila_eg_gene | |
| 180 Thalassiosira pseudonana tpseudonana_eg_gene | |
| 181 Toxoplasma gondii tgondii_eg_gene | |
| 182 Trypanosoma brucei tbrucei_eg_gene | |
| 183 | |
| 184 >Vertebrates | |
| 185 Alpaca (Vicugna pacos) vpacos_gene_ensembl | |
| 186 Amazon molly (Poecilia formosa) pformosa_gene_ensembl | |
| 187 Anole lizard (Anolis carolinensis) acarolinensis_gene_ensembl | |
| 188 Armadillo (Dasypus novemcinctus) dnovemcinctus_gene_ensembl | |
| 189 Bushbaby (Otolemur garnettii) ogarnettii_gene_ensembl | |
| 190 C. elegans (Caenorhabditis elegans) celegans_gene_ensembl | |
| 191 C.intestinalis (Ciona intestinalis) cintestinalis_gene_ensembl | |
| 192 C.savignyi (Ciona savignyi) csavignyi_gene_ensembl | |
| 193 Cat (Felis catus) fcatus_gene_ensembl | |
| 194 Cave fish (Astyanax mexicanus) amexicanus_gene_ensembl | |
| 195 Chicken (Gallus gallus) ggallus_gene_ensembl | |
| 196 Chimpanzee (Pan troglodytes) ptroglodytes_gene_ensembl | |
| 197 Chinese softshell turtle (Pelodiscus sinensis) psinensis_gene_ensembl | |
| 198 Cod (Gadus morhua) gmorhua_gene_ensembl | |
| 199 Coelacanth (Latimeria chalumnae) lchalumnae_gene_ensembl | |
| 200 Cow (Bos taurus) btaurus_gene_ensembl | |
| 201 Dog (Canis lupus familiaris) cfamiliaris_gene_ensembl | |
| 202 Dolphin (Tursiops truncatus) ttruncatus_gene_ensembl | |
| 203 Duck (Anas platyrhynchos) aplatyrhynchos_gene_ensembl | |
| 204 Elephant (Loxodonta africana) lafricana_gene_ensembl | |
| 205 Ferret (Mustela putorius furo) mfuro_gene_ensembl | |
| 206 Flycatcher (Ficedula albicollis) falbicollis_gene_ensembl | |
| 207 Fruitfly (Drosophila melanogaster) dmelanogaster_gene_ensembl | |
| 208 Fugu (Takifugu rubripes) trubripes_gene_ensembl | |
| 209 Gibbon (Nomascus leucogenys) nleucogenys_gene_ensembl | |
| 210 Gorilla (Gorilla gorilla gorilla) ggorilla_gene_ensembl | |
| 211 Guinea Pig (Cavia porcellus) cporcellus_gene_ensembl | |
| 212 Hedgehog (Erinaceus europaeus) eeuropaeus_gene_ensembl | |
| 213 Horse (Equus caballus) ecaballus_gene_ensembl | |
| 214 Human (Homo sapiens) hsapiens_gene_ensembl | |
| 215 Hyrax (Procavia capensis) pcapensis_gene_ensembl | |
| 216 Kangaroo rat (Dipodomys ordii) dordii_gene_ensembl | |
| 217 Lamprey (Petromyzon marinus) pmarinus_gene_ensembl | |
| 218 Lesser hedgehog tenrec (Echinops telfairi) etelfairi_gene_ensembl | |
| 219 Macaque (Macaca mulatta) mmulatta_gene_ensembl | |
| 220 Marmoset (Callithrix jacchus) cjacchus_gene_ensembl | |
| 221 Medaka (Oryzias latipes) olatipes_gene_ensembl | |
| 222 Megabat (Pteropus vampyrus) pvampyrus_gene_ensembl | |
| 223 Microbat (Myotis lucifugus) mlucifugus_gene_ensembl | |
| 224 Mouse (Mus musculus) mmusculus_gene_ensembl | |
| 225 Mouse Lemur (Microcebus murinus) mmurinus_gene_ensembl | |
| 226 Opossum (Monodelphis domestica) mdomestica_gene_ensembl | |
| 227 Orangutan (Pongo abelii) pabelii_gene_ensembl | |
| 228 Panda (Ailuropoda melanoleuca) amelanoleuca_gene_ensembl | |
| 229 Pig (Sus scrofa) sscrofa_gene_ensembl | |
| 230 Pika (Ochotona princeps) oprinceps_gene_ensembl | |
| 231 Platyfish (Xiphophorus maculatus) xmaculatus_gene_ensembl | |
| 232 Platypus (Ornithorhynchus anatinus) oanatinus_gene_ensembl | |
| 233 Rabbit (Oryctolagus cuniculus) ocuniculus_gene_ensembl | |
| 234 Rat (Rattus norvegicus) rnorvegicus_gene_ensembl | |
| 235 S. cerevisiae (Saccharomyces cerevisiae) scerevisiae_gene_ensembl | |
| 236 Sheep (Ovis aries) oaries_gene_ensembl | |
| 237 Shrew (Sorex araneus) saraneus_gene_ensembl | |
| 238 Sloth (Choloepus hoffmanni) choffmanni_gene_ensembl | |
| 239 Spotted gar (Lepisosteus oculatus) loculatus_gene_ensembl | |
| 240 Squirrel (Ictidomys tridecemlineatus) itridecemlineatus_gene_ensembl | |
| 241 Stickleback (Gasterosteus aculeatus) gaculeatus_gene_ensembl | |
| 242 Tarsier (Tarsius syrichta) tsyrichta_gene_ensembl | |
| 243 Tasmanian devil (Sarcophilus harrisii) sharrisii_gene_ensembl | |
| 244 Tetraodon (Tetraodon nigroviridis) tnigroviridis_gene_ensembl | |
| 245 Tilapia (Oreochromis niloticus) oniloticus_gene_ensembl | |
| 246 Tree Shrew (Tupaia belangeri) tbelangeri_gene_ensembl | |
| 247 Turkey (Meleagris gallopavo) mgallopavo_gene_ensembl | |
| 248 Vervet-AGM (Chlorocebus sabaeus) csabaeus_gene_ensembl | |
| 249 Wallaby (Macropus eugenii) meugenii_gene_ensembl | |
| 250 Xenopus (Xenopus tropicalis) xtropicalis_gene_ensembl | |
| 251 Zebra Finch (Taeniopygia guttata) tguttata_gene_ensembl | |
| 252 Zebrafish (Danio rerio) drerio_gene_ensembl |