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comparison peptide_shaker.xml @ 5:39416af5d0bc draft

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author galaxyp
date Mon, 24 Jun 2013 12:46:59 -0400
parents fb591fc7241c
children 74dbec22e775
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4:733c4ee877a4 5:39416af5d0bc
205 <data format="tabular" name="output_peptides" label="PeptideShaker Peptide Report for ${on_string}" from_work_dir="peptides.txt" /> 205 <data format="tabular" name="output_peptides" label="PeptideShaker Peptide Report for ${on_string}" from_work_dir="peptides.txt" />
206 <data format="tabular" name="output_proteins" label="PeptideShaker Protein Report for ${on_string}" from_work_dir="proteins.txt" /> 206 <data format="tabular" name="output_proteins" label="PeptideShaker Protein Report for ${on_string}" from_work_dir="proteins.txt" />
207 <data format="tabular" name="output_psms" label="PeptideShaker PSM Report for ${on_string}" from_work_dir="psms.txt" /> 207 <data format="tabular" name="output_psms" label="PeptideShaker PSM Report for ${on_string}" from_work_dir="psms.txt" />
208 </outputs> 208 </outputs>
209 <requirements> 209 <requirements>
210 <requirement type="package">peptide_shaker</requirement> 210 <requirement type="package" version="0.20.1">PeptideShaker</requirement>
211 <requirement type="package">searchgui</requirement> 211 <requirement type="package" version="1.13.1">SearchGUI</requirement>
212 </requirements> 212 </requirements>
213 <help> 213 <help>
214 **What it does** 214 **What it does**
215 215
216 Runs multiple search engines (X! Tandem and OMSSA) on any number of MGF peak lists using the SearchGUI application and combines the result via PeptideShaker. 216 Runs multiple search engines (X! Tandem and OMSSA) on any number of MGF peak lists using the SearchGUI application and combines the result via PeptideShaker.