Mercurial > repos > galaxyp > peptideshaker

comparison searchgui.xml @ 61:3ec27b4cee7c draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit fc2810c412d9954fa584ae74497562b986c52764"
author galaxyp
date Thu, 12 Aug 2021 14:06:52 +0000
parents a6ff76e057fd
children
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60:a6ff76e057fd 61:3ec27b4cee7c
178 Remember to choose only .mzML files when using MetaMorpheus." /> 178 Remember to choose only .mzML files when using MetaMorpheus." />
179 179
180 <!-- Search Engine Selection --> 180 <!-- Search Engine Selection -->
181 <section name="search_engines_options" expanded="true" title="Search Engine Options"> 181 <section name="search_engines_options" expanded="true" title="Search Engine Options">
182 <param name="engines" type="select" display="checkboxes" multiple="True" label="DB-Search Engines"> 182 <param name="engines" type="select" display="checkboxes" multiple="True" label="DB-Search Engines">
183 <help>Comet and Tide shouldn't both be selected since they use a similar algoritm. OMSSA might not work into isolated environments like containers. Ms Amanda may not work either when executed into isolated environments based on MacOS X. 183 <help>Comet and Tide shouldn't both be selected since they use a similar algoritm. OMSSA might not work into isolated environments like containers. Ms Amanda may not work either when executed into isolated environments based on MacOS X (use SG 4.0.22 to solve any problem running MsAmanda).
184 MetaMorpheus only produce results when using mzML format.</help> 184 MetaMorpheus only produce results when using mzML format.</help>
185 <option value="X!Tandem" selected="True">X!Tandem</option> 185 <option value="X!Tandem" selected="True">X!Tandem</option>
186 <option value="MSGF" selected="True">MS-GF+</option> 186 <option value="MSGF" selected="True">MS-GF+</option>
187 <option value="OMSSA">OMSSA</option> 187 <option value="OMSSA">OMSSA</option>
188 <option value="Comet">Comet</option> 188 <option value="Comet">Comet</option>