Mercurial > repos > galaxyp > peptideshaker

comparison macros.xml @ 37:7f2aeb19650f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 51e887df61a85708547a1513b9a6616bd014d073
author galaxyp
date Thu, 23 Mar 2017 18:47:12 -0400
parents bced7eb9e197
children 79e37eff006d
comparison
equal deleted inserted replaced
36:bced7eb9e197 37:7f2aeb19650f
47 -variable_mods "$variable_mods_str" 47 -variable_mods "$variable_mods_str"
48 #end if 48 #end if
49 49
50 </token> 50 </token>
51 <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> 51 <token name="@SEARCHGUI_MAJOR_VERSION@">3</token>
52 <token name="@SEARCHGUI_VERSION@">3.2.8</token> 52 <token name="@SEARCHGUI_VERSION@">3.2.11</token>
53 <xml name="general_options"> 53 <xml name="general_options">
54 54
55 <section name="protein_digest_options" expanded="false" title="Protein Digestion Options"> 55 <section name="protein_digest_options" expanded="false" title="Protein Digestion Options">
56 <conditional name="digestion"> 56 <conditional name="digestion">
57 <param name="cleavage" type="select" label="Digestion"> 57 <param name="cleavage" type="select" label="Digestion">
122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units"
123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions">
124 <option value="1">Parts per million (ppm)</option> 124 <option value="1">Parts per million (ppm)</option>
125 <option value="2">Daltons</option> 125 <option value="2">Daltons</option>
126 </param> 126 </param>
127 <param name="precursor_ion_tol" type="float" value="10" label="Percursor Ion Tolerance" 127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance"
128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/>
129 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)" 129 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)"
130 help="Provide error value for fragment ions, based on instrument used"/> 130 help="Provide error value for fragment ions, based on instrument used"/>
131 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> 131 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/>
132 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> 132 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/>