Mercurial > repos > galaxyp > peptideshaker

comparison README.rst @ 24:815f93bb3e1b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author galaxyp
date Fri, 06 Nov 2015 15:33:34 -0500
parents dfaea053e32f
children bb0130ff73ce
comparison
equal deleted inserted replaced
23:913dbf2b83e0 24:815f93bb3e1b
40 For more help on installing Mono please see http://www.mono-project.com/download. 40 For more help on installing Mono please see http://www.mono-project.com/download.
41 41
42 Note 42 Note
43 ---- 43 ----
44 44
45 - Requires Galaxy release v15.10 or later, which fixes the installation of package_peptideshaker_1_1 and provides a searchgui_archive datatype that includes a version
46
45 - PeptideShaker may require xvfb to simulate an X environment if this is installed on a headless server. 47 - PeptideShaker may require xvfb to simulate an X environment if this is installed on a headless server.
46 48
47 See: 49 See:
48 50
49 * <https://code.google.com/p/peptide-shaker/> 51 * <https://code.google.com/p/peptide-shaker/>
50 * <https://code.google.com/p/searchgui/> 52 * <https://code.google.com/p/searchgui/>
51 53
54
55 Search GUI - Fixed and Variable Modifications
56 -------------------------------------------
57
58 - Options for modifications are read from local data file: searchgui_mods.loc
59 This is copied from searchgui_mods.loc.sample on the first installation.
60
61 The modifications are from: https://github.com/compomics/compomics-utilities/blob/master/src/main/java/com/compomics/util/experiment/identification/search_parameters_cli/IdentificationParametersInputBean.java
52 62
53 GalaxyP Community 63 GalaxyP Community
54 ----------------- 64 -----------------
55 65
56 Current governing community policies for GalaxyP_ and other information can be found at: 66 Current governing community policies for GalaxyP_ and other information can be found at: