Mercurial > repos > galaxyp > peptideshaker

comparison macros_modifications.xml @ 52:864bd76db767 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 9dc7c9c3ebd64f14c0ce95a0dc190361a90fa4fb
author galaxyp
date Wed, 16 Jan 2019 08:18:39 -0500
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51:66690eb50a32 52:864bd76db767
1 <macros>
2 <xml name="modifications">
3 <option value="18O(1) of peptide C-term">18O(1) of peptide C-term</option>
4 <option value="18O(2) of peptide C-term">18O(2) of peptide C-term</option>
5 <option value="4-Hydroxyproline">4-Hydroxyproline</option>
6 <option value="Acetaldehyde +26">Acetaldehyde +26</option>
7 <option value="Acetylation of K">Acetylation of K</option>
8 <option value="Acetylation of peptide N-term">Acetylation of peptide N-term</option>
9 <option value="Acetylation of protein N-term">Acetylation of protein N-term</option>
10 <option value="Amidation of the peptide C-term">Amidation of the peptide C-term</option>
11 <option value="Amidation of the protein C-term">Amidation of the protein C-term</option>
12 <option value="Arginine 13C(6)">Arginine 13C(6)</option>
13 <option value="Arginine 13C(6) 15N(4)">Arginine 13C(6) 15N(4)</option>
14 <option value="Carbamidomethylation of C">Carbamidomethylation of C</option>
15 <option value="Carbamidomethylation of E">Carbamidomethylation of E</option>
16 <option value="Carbamidomethylation of K">Carbamidomethylation of K</option>
17 <option value="Carbamilation of K">Carbamilation of K</option>
18 <option value="Carbamilation of protein N-term">Carbamilation of protein N-term</option>
19 <option value="Carboxymethylation of C">Carboxymethylation of C</option>
20 <option value="Citrullination of R">Citrullination of R</option>
21 <option value="Deamidation of N">Deamidation of N</option>
22 <option value="Deamidation of N 18O">Deamidation of N 18O</option>
23 <option value="Deamidation of Q">Deamidation of Q</option>
24 <option value="Dehydration of S">Dehydration of S</option>
25 <option value="Dehydration of T">Dehydration of T</option>
26 <option value="Didehydro of T">Didehydro of T</option>
27 <option value="Diiodination of Y">Diiodination of Y</option>
28 <option value="Dimethylation of K">Dimethylation of K</option>
29 <option value="Dimethylation of K 2H(4)">Dimethylation of K 2H(4)</option>
30 <option value="Dimethylation of K 2H(6)">Dimethylation of K 2H(6)</option>
31 <option value="Dimethylation of K 2H(6) 13C(2)">Dimethylation of K 2H(6) 13C(2)</option>
32 <option value="Dimethylation of R">Dimethylation of R</option>
33 <option value="Dimethylation of peptide N-term">Dimethylation of peptide N-term</option>
34 <option value="Dimethylation of peptide N-term 2H(4)">Dimethylation of peptide N-term 2H(4)</option>
35 <option value="Dimethylation of peptide N-term 2H(6)">Dimethylation of peptide N-term 2H(6)</option>
36 <option value="Dimethylation of peptide N-term 2H(6) 13C(2)">Dimethylation of peptide N-term 2H(6) 13C(2)</option>
37 <option value="Dioxidation of M">Dioxidation of M</option>
38 <option value="Dioxidation of W">Dioxidation of W</option>
39 <option value="Farnesylation of C">Farnesylation of C</option>
40 <option value="FormylMet of protein N-term">FormylMet of protein N-term</option>
41 <option value="Formylation of K">Formylation of K</option>
42 <option value="Formylation of S">Formylation of S</option>
43 <option value="Formylation of T">Formylation of T</option>
44 <option value="Formylation of peptide N-term">Formylation of peptide N-term</option>
45 <option value="Formylation of protein N-term">Formylation of protein N-term</option>
46 <option value="Geranyl-geranyl of C">Geranyl-geranyl of C</option>
47 <option value="Glutathione of C">Glutathione of C</option>
48 <option value="Guanidination of K">Guanidination of K</option>
49 <option value="Guanidination of peptide N-term">Guanidination of peptide N-term</option>
50 <option value="Heme B of C">Heme B of C</option>
51 <option value="Heme B of H">Heme B of H</option>
52 <option value="Hex(1)NAc(1) of S">Hex(1)NAc(1) of S</option>
53 <option value="Hex(1)NAc(1) of T">Hex(1)NAc(1) of T</option>
54 <option value="Hex(5) HexNAc(4) NeuAc(2) Na of N">Hex(5) HexNAc(4) NeuAc(2) Na of N</option>
55 <option value="Hex(5) HexNAc(4) NeuAc(2) of N">Hex(5) HexNAc(4) NeuAc(2) of N</option>
56 <option value="HexNAc of S">HexNAc of S</option>
57 <option value="HexNAc of T">HexNAc of T</option>
58 <option value="Hexose of K">Hexose of K</option>
59 <option value="Homoserine lactone of peptide C-term M">Homoserine lactone of peptide C-term M</option>
60 <option value="Homoserine of peptide C-term M">Homoserine of peptide C-term M</option>
61 <option value="ICAT-9">ICAT-9</option>
62 <option value="ICAT-O">ICAT-O</option>
63 <option value="ICPL0 of K">ICPL0 of K</option>
64 <option value="ICPL0 of peptide N-term">ICPL0 of peptide N-term</option>
65 <option value="ICPL10 of K">ICPL10 of K</option>
66 <option value="ICPL10 of peptide N-term">ICPL10 of peptide N-term</option>
67 <option value="ICPL4 of K">ICPL4 of K</option>
68 <option value="ICPL4 of peptide N-term">ICPL4 of peptide N-term</option>
69 <option value="ICPL6 of K">ICPL6 of K</option>
70 <option value="ICPL6 of peptide N-term">ICPL6 of peptide N-term</option>
71 <option value="Isoleucine 13C(6) 15N(1)">Isoleucine 13C(6) 15N(1)</option>
72 <option value="iodoTMT zero of C">iodoTMT zero of C</option>
73 <option value="iodoTMT 6-plex of C">iodoTMT 6-plex of C</option>
74 <option value="Label of K 2H(4)">Label of K 2H(4)</option>
75 <option value="Leucine 13C(6) 15N(1)">Leucine 13C(6) 15N(1)</option>
76 <option value="Lipoyl of K">Lipoyl of K</option>
77 <option value="Lysine 13C(6)">Lysine 13C(6)</option>
78 <option value="Lysine 13C(6) 15N(2)">Lysine 13C(6) 15N(2)</option>
79 <option value="Lysine 2H(4)">Lysine 2H(4)</option>
80 <option value="Methylation of C">Methylation of C</option>
81 <option value="Methylation of D">Methylation of D</option>
82 <option value="Methylation of E">Methylation of E</option>
83 <option value="Methylation of K">Methylation of K</option>
84 <option value="Methylation of R">Methylation of R</option>
85 <option value="Methylation of S">Methylation of S</option>
86 <option value="Methylthio of C">Methylthio of C</option>
87 <option value="Methylthio of D">Methylthio of D</option>
88 <option value="Methylthio of N">Methylthio of N</option>
89 <option value="NIPCAM of C">NIPCAM of C</option>
90 <option value="Nethylmaleimide of C">Nethylmaleimide of C</option>
91 <option value="Oxidation of C">Oxidation of C</option>
92 <option value="Oxidation of K">Oxidation of K</option>
93 <option value="Oxidation of M">Oxidation of M</option>
94 <option value="Oxidation of P">Oxidation of P</option>
95 <option value="Palmitoylation of C">Palmitoylation of C</option>
96 <option value="Palmitoylation of K">Palmitoylation of K</option>
97 <option value="Palmitoylation of S">Palmitoylation of S</option>
98 <option value="Palmitoylation of T">Palmitoylation of T</option>
99 <option value="Palmitoylation of protein N-term">Palmitoylation of protein N-term</option>
100 <option value="Phosphorylation of S">Phosphorylation of S</option>
101 <option value="Phosphorylation of T">Phosphorylation of T</option>
102 <option value="Phosphorylation of Y">Phosphorylation of Y</option>
103 <option value="Proline 13C(5)">Proline 13C(5)</option>
104 <option value="Propionamide of C">Propionamide of C</option>
105 <option value="Propionamide of K">Propionamide of K</option>
106 <option value="Propionamide of peptide N-term">Propionamide of peptide N-term</option>
107 <option value="Propionyl of K heavy">Propionyl of K heavy</option>
108 <option value="Propionyl of K light">Propionyl of K light</option>
109 <option value="Propionyl of peptide N-term heavy">Propionyl of peptide N-term heavy</option>
110 <option value="Propionyl of peptide N-term light">Propionyl of peptide N-term light</option>
111 <option value="Pyridylethyl of C">Pyridylethyl of C</option>
112 <option value="Pyrolidone from E">Pyrolidone from E</option>
113 <option value="Pyrolidone from Q">Pyrolidone from Q</option>
114 <option value="Pyrolidone from carbamidomethylated C">Pyrolidone from carbamidomethylated C</option>
115 <option value="SUMO-2/3 Q87R">SUMO-2/3 Q87R</option>
116 <option value="Sodium adduct to D">Sodium adduct to D</option>
117 <option value="Sodium adduct to E">Sodium adduct to E</option>
118 <option value="Sulfation of S">Sulfation of S</option>
119 <option value="Sulfation of T">Sulfation of T</option>
120 <option value="Sulfation of Y">Sulfation of Y</option>
121 <option value="S-nitrosylation">S-nitrosylation</option>
122 <option value="TMT 10-plex of K">TMT 10-plex of K</option>
123 <option value="TMT 10-plex of peptide N-term">TMT 10-plex of peptide N-term</option>
124 <option value="TMT 2-plex of K">TMT 2-plex of K</option>
125 <option value="TMT 2-plex of peptide N-term">TMT 2-plex of peptide N-term</option>
126 <option value="TMT 6-plex of K">TMT 6-plex of K</option>
127 <option value="TMT 6-plex of K+4">TMT 6-plex of K+4</option>
128 <option value="TMT 6-plex of K+6">TMT 6-plex of K+6</option>
129 <option value="TMT 6-plex of K+8">TMT 6-plex of K+8</option>
130 <option value="TMT 6-plex of peptide N-term">TMT 6-plex of peptide N-term</option>
131 <option value="TMT 10-plex of K+4">TMT 10-plex of K+4</option>
132 <option value="TMT 10-plex of K+6">TMT 10-plex of K+6</option>
133 <option value="TMT 10-plex of K+8">TMT 10-plex of K+8</option>
134 <option value="TMT 10-plex of peptide N-term">TMT 10-plex of peptide N-term</option>
135 <option value="TMT 11-plex of K+4">TMT 11-plex of K+4</option>
136 <option value="TMT 11-plex of K+6">TMT 11-plex of K+6</option>
137 <option value="TMT 11-plex of K+8">TMT 11-plex of K+8</option>
138 <option value="TMT 11-plex of peptide N-term">TMT 11-plex of peptide N-term</option>
139 <option value="Thioacyl of peptide N-term">Thioacyl of peptide N-term</option>
140 <option value="Trideuterated Methyl Ester of D">Trideuterated Methyl Ester of D</option>
141 <option value="Trideuterated Methyl Ester of E">Trideuterated Methyl Ester of E</option>
142 <option value="Trideuterated Methyl Ester of K">Trideuterated Methyl Ester of K</option>
143 <option value="Trideuterated Methyl Ester of R">Trideuterated Methyl Ester of R</option>
144 <option value="Trideuterated Methyl Ester of peptide C-term">Trideuterated Methyl Ester of peptide C-term</option>
145 <option value="Trimethylation of K">Trimethylation of K</option>
146 <option value="Trimethylation of R">Trimethylation of R</option>
147 <option value="Trimethylation of protein N-term A">Trimethylation of protein N-term A</option>
148 <option value="Trioxidation of C">Trioxidation of C</option>
149 <option value="Ubiquitination of K">Ubiquitination of K</option>
150 <option value="iTRAQ 4-plex of K">iTRAQ 4-plex of K</option>
151 <option value="iTRAQ 4-plex of Y">iTRAQ 4-plex of Y</option>
152 <option value="iTRAQ 4-plex of peptide N-term">iTRAQ 4-plex of peptide N-term</option>
153 <option value="iTRAQ 8-plex of K">iTRAQ 8-plex of K</option>
154 <option value="iTRAQ 8-plex of Y">iTRAQ 8-plex of Y</option>
155 <option value="iTRAQ 8-plex of peptide N-term">iTRAQ 8-plex of peptide N-term</option>
156 <option value="mTRAQ of 13C(6) 15N(2)">mTRAQ of 13C(6) 15N(2)</option>
157 <option value="mTRAQ of K 13C(3) 15N">mTRAQ of K 13C(3) 15N</option>
158 <option value="mTRAQ of K light">mTRAQ of K light</option>
159 <option value="mTRAQ of peptide N-term 13C(3) 15N">mTRAQ of peptide N-term 13C(3) 15N</option>
160 <option value="mTRAQ of peptide N-term 13C(6) 15N(2)">mTRAQ of peptide N-term 13C(6) 15N(2)</option>
161 <option value="mTRAQ of peptide N-term light">mTRAQ of peptide N-term light</option>
162 </xml>
163 </macros>