Mercurial > repos > galaxyp > peptideshaker

comparison macros.xml @ 42:9e20c34298e3 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 0ce31532e2d232c87298f3aa73d02fc201fa108d
author galaxyp
date Tue, 23 Jan 2018 08:48:07 -0500
parents 3634c90301af
children 7963340ab569
comparison
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41:3634c90301af 42:9e20c34298e3
120 120
121 <section name="precursor_options" expanded="false" title="Precursor Options"> 121 <section name="precursor_options" expanded="false" title="Precursor Options">
122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units"
123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions">
124 <option value="1">Parts per million (ppm)</option> 124 <option value="1">Parts per million (ppm)</option>
125 <option value="2">Daltons</option> 125 <option value="0">Daltons</option>
126 </param> 126 </param>
127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance" 127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance"
128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/>
129 <param name="fragment_tol_units" type="select" label="Fragment Tolerance Units" 129 <param name="fragment_tol_units" type="select" label="Fragment Tolerance Units"
130 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> 130 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions">
131 <option value="1">Parts per million (ppm)</option> 131 <option value="1">Parts per million (ppm)</option>
132 <option value="2">Daltons</option> 132 <option value="0">Daltons</option>
133 </param> 133 </param>
134 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance" 134 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance"
135 help="Provide error value for fragment ions, based on instrument used"/> 135 help="Provide error value for fragment ions, based on instrument used"/>
136 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> 136 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/>
137 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> 137 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/>