Mercurial > repos > galaxyp > peptideshaker
comparison reverse.xml @ 2:fb591fc7241c draft
Improved some datatype handling
| author | galaxyp |
|---|---|
| date | Thu, 20 Jun 2013 11:02:36 -0400 |
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| 1:7a74818e0eeb | 2:fb591fc7241c |
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| 1 <tool id="compomics_reverse" name="Create Target-Decoy Database" version="0.1.0"> | |
| 2 <description>Creates a target-decoy database for use with Peptide Shaker</description> | |
| 3 | |
| 4 <requirements> | |
| 5 </requirements> | |
| 6 | |
| 7 <command interpreter="python">reverse.py --input='$input' --output='$output'</command> | |
| 8 | |
| 9 <inputs> | |
| 10 <param format="fasta" name="input" type="data" label="FASTA Input" /> | |
| 11 </inputs> | |
| 12 | |
| 13 <outputs> | |
| 14 <data format="fasta" name="output" /> | |
| 15 </outputs> | |
| 16 | |
| 17 <help> | |
| 18 **What it does** | |
| 19 | |
| 20 Given an input database, this tool will produce a target-decoy | |
| 21 database in the format required by PeptideShaker using dbtoolkit. | |
| 22 | |
| 23 ------ | |
| 24 | |
| 25 **Citation** | |
| 26 | |
| 27 For the underlying tool, please cite `Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5`. | |
| 28 | |
| 29 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker . | |
| 30 | |
| 31 </help> | |
| 32 </tool> |