Mercurial > repos > galaxyp > peptideshaker

comparison fasta_cli.xml @ 61:3ec27b4cee7c draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit fc2810c412d9954fa584ae74497562b986c52764"
author galaxyp
date Thu, 12 Aug 2021 14:06:52 +0000
parents 943a34df6047
children
comparison
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60:a6ff76e057fd 61:3ec27b4cee7c
44 <param format="fasta" name="input_database" type="data" label="Protein Database" 44 <param format="fasta" name="input_database" type="data" label="Protein Database"
45 help="Select FASTA database from history"/> 45 help="Select FASTA database from history"/>
46 46
47 <section name="database_processing_options" expanded="true" title="Database Processing Options"> 47 <section name="database_processing_options" expanded="true" title="Database Processing Options">
48 48
49 <param name="decoy_tag" type="text" value="-REVERSED" label="The decoy flag"> 49 <param name="decoy_tag" type="text" value="_REVERSED" label="The decoy flag">
50 </param> 50 </param>
51 <param name="decoy_type" type="select" label="Location of the decoy flag: prefix or suffix"> 51 <param name="decoy_type" type="select" label="Location of the decoy flag: prefix or suffix">
52 <option value="1">Prefix</option> 52 <option value="1">Prefix</option>
53 <option value="2" selected="True">Suffix</option> 53 <option value="2" selected="True">Suffix</option>
54 </param> 54 </param>
72 <help> 72 <help>
73 **What it does** 73 **What it does**
74 74
75 Appends decoy sequences to FASTA files. Default format is adequated to be used by SearchGUI and PeptideShaker tools, ie: 75 Appends decoy sequences to FASTA files. Default format is adequated to be used by SearchGUI and PeptideShaker tools, ie:
76 76
77 * Decoy flag: -REVERSED 77 * Decoy flag: _REVERSED
78 78
79 * Location: suffix 79 * Location: suffix
80 80
81 * Target decoy suffix: _concatenated_target_decoy 81 * Target decoy suffix: _concatenated_target_decoy
82 82