Mercurial > repos > galaxyp > peptideshaker

diff searchgui.xml @ 56:1beff3ddce58 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f2f9adb0e2389a95599d651b4eecab6b10244c75"
author galaxyp
date Wed, 20 Jan 2021 13:29:07 +0000
parents bb0130ff73ce
children da885ca16cb2
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line diff
--- a/searchgui.xml	Fri Jan 15 14:06:27 2021 +0000
+++ b/searchgui.xml	Wed Jan 20 13:29:07 2021 +0000
@@ -22,6 +22,8 @@
 
         mkdir output;
         mkdir output_reports;
+        mkdir temp_folder;
+        mkdir log_folder;
         cwd=`pwd`;
         export HOME=\$cwd;
 
@@ -63,7 +65,8 @@
             -fasta_file "\$cwd/input_fasta_file.fasta"
             -output_folder \$cwd/output
             -id_params ./SEARCHGUI_IdentificationParameters.par
-
+            -temp_folder \$cwd/temp_folder
+            -log \$cwd/log_folder
             -threads "\${GALAXY_SLOTS:-12}"
 
             #if $searchgui_advanced.searchgui_advanced_selector == 'advanced'