Mercurial > repos > galaxyp > peptideshaker
diff macros_basic.xml @ 55:bb0130ff73ce draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
author | galaxyp |
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date | Fri, 15 Jan 2021 14:06:27 +0000 |
parents | |
children | 1beff3ddce58 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros_basic.xml Fri Jan 15 14:06:27 2021 +0000 @@ -0,0 +1,24 @@ +<macros> + <xml name="stdio"> + <stdio> + <exit_code range="1:" level="fatal" description="Job Failed" /> + <regex match="java.*Exception" level="fatal" description="Java Exception"/> + <regex match="Could not reserve enough space for * object heap" level="fatal" description="Out of memory"/> + <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/> + <regex match="PeptideShaker ran out of memory" level="fatal" description="JVM Error"/> + <regex match="CompomicsError" level="fatal" description="Compomics Error"/> + </stdio> + </xml> + <token name="@SEARCHGUI_MAJOR_VERSION@">4</token> + <token name="@SEARCHGUI_VERSION@">4.0.7</token> + <token name="@SEARCHGUI_VERSION_SUFFIX@">0</token> + <token name="@PEPTIDESHAKER_VERSION@">2.0.5</token> + <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">3</token> + <xml name="citations"> + <citations> + <citation type="doi">10.1186/1471-2105-12-70</citation> + <citation type="doi">10.1002/pmic.201000595</citation> + <citation type="doi">doi:10.1038/nbt.3109</citation> + </citations> + </xml> +</macros>