Mercurial > repos > galaxyp > peptideshaker
diff test-data/Identification_Parameters_specific.par @ 55:bb0130ff73ce draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
| author | galaxyp |
|---|---|
| date | Fri, 15 Jan 2021 14:06:27 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Identification_Parameters_specific.par Fri Jan 15 14:06:27 2021 +0000 @@ -0,0 +1,882 @@ +{ + "marshallableParameterType": "identification_parameters", + "version": "5.0.1", + "name": "IdentificationParametersOutput", + "description": "Fixed: Carbamidomethylation of C.\nVariable: Oxidation of M.\nPrecursor Tolerance: 100.0 ppm.\nFragment Tolerance: 0.5 Da.\nCharge: 1-3.\n", + "defaultDescription": true, + "searchParameters": { + "version": "5.0.1", + "precursorAccuracyType": "PPM", + "fragmentAccuracyType": "DA", + "precursorTolerance": 100.0, + "fragmentIonMZTolerance": 0.5, + "modificationParameters": { + "fixedModifications": [ + "Carbamidomethylation of C" + ], + "variableModifications": [ + "Oxidation of M" + ], + "refinementVariableModifications": [], + "refinementFixedModifications": [], + "colors": {}, + "backUp": { + "Carbamidomethylation of C": { + "modificationType": "modaa", + "name": "Carbamidomethylation of C", + 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"proteinInferenceParameters": { + "modificationRefinement": true, + "simplifyProteinGroups": true, + "simplifyGroupsEvidence": true, + "simplifyGroupsConfidence": true, + "simplifyGroupsEnzymaticity": true, + "simplifyGroupsVariants": true, + "confidenceThreshold": 0.05, + "id": 0 + }, + "idValidationParameters": { + "defaultProteinFDR": 1.0, + "defaultPeptideFDR": 1.0, + "defaultPsmFDR": 1.0, + "validationQCPreferences": { + "dbSize": false, + "firstDecoy": true, + "confidenceMargin": 1.0, + "id": 0 + }, + "id": 0 + }, + "fractionParameters": { + "proteinConfidenceMwPlots": 95.0, + "fractionMolecularWeightRanges": {}, + "id": 0 + }, + "fastaParameters": { + "targetDecoy": true, + "decoyFlag": "-REVERSED", + "decoySuffix": true, + "targetDecoyFileNameTag": "_concatenated_target_decoy", + "id": 0 + }, + "id": 0 +} \ No newline at end of file