diff macros_basic.xml @ 57:da885ca16cb2 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 44a20633e04b2396fad4b568904a257769b2bbc1"
author galaxyp
date Tue, 16 Mar 2021 15:12:03 +0000
parents 1beff3ddce58
children 07ff622ec007
line wrap: on
line diff
--- a/macros_basic.xml	Wed Jan 20 13:29:07 2021 +0000
+++ b/macros_basic.xml	Tue Mar 16 15:12:03 2021 +0000
@@ -2,17 +2,18 @@
     <xml name="stdio">
         <stdio>
             <exit_code range="1:" level="fatal" description="Job Failed" />
+            <regex match="OutOfMemoryError" level="fatal_oom" description="Out of memory"/>
             <regex match="java.*Exception" level="fatal" description="Java Exception"/>
-            <regex match="Could not reserve enough space for * object heap" level="fatal" description="Out of memory"/>
+            <regex match="Could not reserve enough space for * object heap" level="fatal_oom" description="Out of memory"/>
             <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>
-            <regex match="PeptideShaker ran out of memory" level="fatal" description="JVM Error"/>
+            <regex match="PeptideShaker ran out of memory" level="fatal_oom" description="JVM Error"/>
             <regex match="CompomicsError" level="fatal" description="Compomics Error"/>
         </stdio>
     </xml>
     <token name="@SEARCHGUI_MAJOR_VERSION@">4</token>
-    <token name="@SEARCHGUI_VERSION@">4.0.12</token>
+    <token name="@SEARCHGUI_VERSION@">4.0.22</token>
     <token name="@SEARCHGUI_VERSION_SUFFIX@">0</token>
-    <token name="@PEPTIDESHAKER_VERSION@">2.0.9</token>
+    <token name="@PEPTIDESHAKER_VERSION@">2.0.15</token>
     <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">0</token>
     <xml name="citations">
         <citations>